From 518ba33fef9208a1dd1c1826c483092bde00dc28 Mon Sep 17 00:00:00 2001
From: Petr Grigorev <grigorievpit@gmail.com>
Date: Wed, 24 Jul 2024 19:10:38 +0200
Subject: [PATCH 1/4] DOC: revert nglview back to version 3.0.8

---
 docs/requirements.txt | 2 +-
 pyproject.toml        | 3 +--
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index 7cc5cbcc7..65129924a 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -3,4 +3,4 @@ ase>=3.16.0
 sphinx_rtd_theme
 jupytext
 sphinxcontrib-spelling
-nglview==3.1.2
+nglview==3.0.8
diff --git a/pyproject.toml b/pyproject.toml
index 4381a5a78..6b90aa98d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -41,7 +41,6 @@ test = [
 docs = [
     "sphinx",
     "myst_nb",
-    "nglview",
     "numpydoc",
     "atomman",
     "ovito",
@@ -50,7 +49,7 @@ docs = [
     "sphinxcontrib-spelling",
     "pydata-sphinx-theme",
     "jupytext",
-    "nglview==3.1.2"  # resolves https://github.com/libAtoms/matscipy/issues/222
+    "nglview==3.0.8"  # resolves https://github.com/libAtoms/matscipy/issues/222
 ]
 cli = [
     "argcomplete"

From 272c1638070119db51d26fa51dd43c465d9dee58 Mon Sep 17 00:00:00 2001
From: Petr Grigorev <grigorievpit@gmail.com>
Date: Wed, 24 Jul 2024 19:11:18 +0200
Subject: [PATCH 2/4] DOC: increase cell execution timout to 60s

---
 docs/conf.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/conf.py b/docs/conf.py
index c27f922dd..21d773218 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -284,7 +284,7 @@
 # Raise Error (not default Warning) when a notebook execution fails
 # (due to code error, timeout, etc.)
 nb_execution_raise_on_error = True
-
+nb_execution_timeout = 60
 
 # -- Extension configuration -------------------------------------------------
 

From b242d28f15f93878a9188db3d075444df21902f1 Mon Sep 17 00:00:00 2001
From: Petr Grigorev <grigorievpit@gmail.com>
Date: Wed, 24 Jul 2024 19:11:49 +0200
Subject: [PATCH 3/4] added setting for renovate.bot for nglview

---
 renovate.json | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/renovate.json b/renovate.json
index 5db72dd6a..72ddd8cb1 100644
--- a/renovate.json
+++ b/renovate.json
@@ -4,3 +4,11 @@
     "config:recommended"
   ]
 }
+{
+  "packageRules": [
+    {
+      "matchPackagePatterns": ["nglview"],
+      "dependencyDashboardApproval": true
+    }
+  ]
+}
\ No newline at end of file

From 7eac2a8f940b88696191b284c02d4421c504fbe4 Mon Sep 17 00:00:00 2001
From: Petr Grigorev <grigorievpit@gmail.com>
Date: Wed, 24 Jul 2024 19:13:41 +0200
Subject: [PATCH 4/4] DOC: fixed typo for dissociated dislocations

---
 docs/applications/cylinder_configurations.ipynb | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/applications/cylinder_configurations.ipynb b/docs/applications/cylinder_configurations.ipynb
index 933344ce5..feff89180 100644
--- a/docs/applications/cylinder_configurations.ipynb
+++ b/docs/applications/cylinder_configurations.ipynb
@@ -473,7 +473,7 @@
     "Due to stable Intrinsic Stacking Fault (ISF) the 1/2<110> dislocations are not stable and dissociate in two 1/6<112> Shockley partials separated by stacking fault. For example:\n",
     "\n",
     "$$\n",
-    "    \\frac{1}{2}[1\\bar10] \\rightarrow \\frac{1}{6}[2\\bar1\\bar1] + \\mathrm{ISF} + \\frac{1}{2}[1\\bar21]\n",
+    "    \\frac{1}{2}[1\\bar10] \\rightarrow \\frac{1}{6}[2\\bar1\\bar1] + \\mathrm{ISF} + \\frac{1}{6}[1\\bar21]\n",
     "$$\n",
     "\n",
     "where ISF is intrinsic stacking fault. It is possible to pass a parameter `partial_distance` to `build_cylinder()` function in order to create dissociated dislocation. `partial distance` defines separation distance (length of the stacking fault) of two partial dislocations. The value corresponds to number of glide distances the distance in Angstrom be obtaines as `patial_distance * dislocation.glide_distance`."
@@ -724,7 +724,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.12"
+   "version": "3.12.4"
   }
  },
  "nbformat": 4,