From a85a0d0f0ffea6a8377227586800a05f03079643 Mon Sep 17 00:00:00 2001 From: cgpu Date: Thu, 21 Jan 2021 13:51:04 +0000 Subject: [PATCH] Exposes as param executor, errorStrategy --- nextflow.config | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/nextflow.config b/nextflow.config index 5b20591..6dbafb2 100644 --- a/nextflow.config +++ b/nextflow.config @@ -1,7 +1,10 @@ params { + executor = 'ignite' + errorStrategy = 'ignore' processA_cpus = 1 echo = false s3Location = 's3://lifebit-featured-datasets/pipelines/spammer-nf/input_files' + fileSuffix = '' repsProcessA = 10 processAWriteToDiskMb = 10 processATimeRange = "1-2" @@ -21,7 +24,7 @@ docker.enabled = true process { cpus = 1 - errorStrategy = 'retry' + errorStrategy = params.errorStrategy container = "quay.io/lifebitai/ubuntu:18.10" withName: processA { @@ -31,7 +34,6 @@ process { } executor { - name = 'ignite' + name = params.executor queueSize = 1000 - pollInterval = '30sec' }