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The underlying issue seems to be that fastq-dump (at least in the versions i have tried out) expects an argument specifying line width after --fasta
Changing line 162 in the partie perl script to specify default as the line width has fixed this issue for me when using fastq-dump 2.11.0
The "Running Partie" section here on github also mentions the option of providing a .txt file with IDs, but i did not manage to get that working. Does this functionality just not exist in the current relase?
Thank your for the great tool, it is very useful to me!
The text was updated successfully, but these errors were encountered:
I have beein trying to feed an sra accession to partie. Those attempts always fail for me, including the tests at https://github.com/linsalrob/partie/blob/master/TEST.md
The underlying issue seems to be that fastq-dump (at least in the versions i have tried out) expects an argument specifying line width after
--fasta
Changing line 162 in the partie perl script to specify
default
as the line width has fixed this issue for me when using fastq-dump 2.11.0The "Running Partie" section here on github also mentions the option of providing a .txt file with IDs, but i did not manage to get that working. Does this functionality just not exist in the current relase?
Thank your for the great tool, it is very useful to me!
The text was updated successfully, but these errors were encountered: