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[BUG] image does not start, prints realpath() of uwsgi.ini failed: No such file or directory [core/utils.c line 3662] #110

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danieldietsch opened this issue Nov 20, 2023 · 4 comments · Fixed by #111
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[BUG] image does not start, prints realpath() of uwsgi.ini failed: No such file or directory [core/utils.c line 3662] #110

danieldietsch opened this issue Nov 20, 2023 · 4 comments · Fixed by #111

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@danieldietsch
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Is there an existing issue for this?

  • I have searched the existing issues

Current Behavior

Image does not start, prints realpath() of uwsgi.ini failed: No such file or directory [core/utils.c line 3662]

Expected Behavior

Image should start.

Steps To Reproduce

  1. Run linuxserver/healthchecks:3.0.1 with default settings.
  2. Observe realpath() of uwsgi.ini failed: No such file or directory [core/utils.c line 3662]

Environment

- OS: Debian 12
- How docker service was installed: disto's packagemanager

CPU architecture

x86-64

Docker creation

yaml
---
version: "2.1"
services:
  healthchecks:
    image: linuxserver/healthchecks:3.0.1
    container_name: ...
    environment:
      - PUID=${HEALTHCHECKS_PUID}
      - PGID=${HEALTHCHECKS_PGID}
      - SITE_ROOT=${HEALTHCHECKS_SITE_ROOT}
      - SITE_NAME=${HEALTHCHECKS_SITE_NAME}
      - DEFAULT_FROM_EMAIL=${HEALTHCHECKS_DEFAULT_FROM_EMAIL}
      - EMAIL_HOST=${HEALTHCHECKS_EMAIL_HOST}
      - EMAIL_PORT=${HEALTHCHECKS_EMAIL_PORT}
      - EMAIL_USE_TLS=${HEALTHCHECKS_EMAIL_USE_TLS}
      - ALLOWED_HOSTS="[*]"
      - SUPERUSER_EMAIL=${HEALTHCHECKS_SUPERUSER_EMAIL}
      - SUPERUSER_PASSWORD=${HEALTHCHECKS_SUPERUSER_PASSWORD}
      - FORCE_HTTPS=False
      - DEBUG=True
      - REGENERATE_SETTINGS=True
    volumes:
      - ...:/config
    restart: unless-stopped
    networks:
      - proxy
      - mail
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.healthchecks.rule=Host(`...`)"
      - "traefik.http.services.healthchecks.loadbalancer.server.port=8000"

networks:
  proxy:
    external: true
  mail:
    external: true


### Container logs

```bash
Attaching to healthchecks
healthchecks | [migrations] started
healthchecks | [migrations] no migrations found
healthchecks | ───────────────────────────────────────
healthchecks |
healthchecks |       ██╗     ███████╗██╗ ██████╗
healthchecks |       ██║     ██╔════╝██║██╔═══██╗
healthchecks |       ██║     ███████╗██║██║   ██║
healthchecks |       ██║     ╚════██║██║██║   ██║
healthchecks |       ███████╗███████║██║╚██████╔╝
healthchecks |       ╚══════╝╚══════╝╚═╝ ╚═════╝
healthchecks |
healthchecks |    Brought to you by linuxserver.io
healthchecks | ───────────────────────────────────────
healthchecks |
healthchecks | To support LSIO projects visit:
healthchecks | https://www.linuxserver.io/donate/
healthchecks |
healthchecks | ───────────────────────────────────────
healthchecks | GID/UID
healthchecks | ───────────────────────────────────────
healthchecks |
healthchecks | User UID:    1000
healthchecks | User GID:    1000
healthchecks | ───────────────────────────────────────
healthchecks |
healthchecks | WARNING: CSRF_TRUSTED_ORIGINS is set to allow connections from all origins, this is insecure.
healthchecks | Migrations for 'api':
healthchecks |   hc/api/migrations/0101_alter_channel_kind.py
healthchecks |     - Alter field kind on channel
healthchecks | Migrations for 'payments':
healthchecks |   hc/payments/migrations/0009_remove_subscription_next_billing_date_and_more.py
healthchecks |     - Remove field next_billing_date from subscription
healthchecks |     - Remove field renew_notice_date from subscription
healthchecks |     - Remove field setup_date from subscription
healthchecks | Admin Command Error: ./manage.py makemigrations
healthchecks | Traceback (most recent call last):
healthchecks |   File "/app/healthchecks/./manage.py", line 13, in <module>
healthchecks |     execute_from_command_line(sys.argv)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/__init__.py", line 442, in execute_from_command_line
healthchecks |     utility.execute()
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/__init__.py", line 436, in execute
healthchecks |     self.fetch_command(subcommand).run_from_argv(self.argv)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/base.py", line 412, in run_from_argv
healthchecks |     self.execute(*args, **cmd_options)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/base.py", line 458, in execute
healthchecks |     output = self.handle(*args, **options)
healthchecks |              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/base.py", line 106, in wrapper
healthchecks |     res = handle_func(*args, **kwargs)
healthchecks |           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/commands/makemigrations.py", line 259, in handle
healthchecks |     self.write_migration_files(changes)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/commands/makemigrations.py", line 363, in write_migration_files
healthchecks |     with open(writer.path, "w", encoding="utf-8") as fh:
healthchecks |          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
healthchecks | PermissionError: [Errno 13] Permission denied: '/app/healthchecks/hc/payments/migrations/0009_remove_subscription_next_billing_date_and_more.py'
healthchecks | Traceback (most recent call last):
healthchecks |   File "/app/healthchecks/./manage.py", line 17, in <module>
healthchecks |     raise e
healthchecks |   File "/app/healthchecks/./manage.py", line 13, in <module>
healthchecks |     execute_from_command_line(sys.argv)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/__init__.py", line 442, in execute_from_command_line
healthchecks |     utility.execute()
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/__init__.py", line 436, in execute
healthchecks |     self.fetch_command(subcommand).run_from_argv(self.argv)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/base.py", line 412, in run_from_argv
healthchecks |     self.execute(*args, **cmd_options)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/base.py", line 458, in execute
healthchecks |     output = self.handle(*args, **options)
healthchecks |              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/base.py", line 106, in wrapper
healthchecks |     res = handle_func(*args, **kwargs)
healthchecks |           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/commands/makemigrations.py", line 259, in handle
healthchecks |     self.write_migration_files(changes)
healthchecks |   File "/lsiopy/lib/python3.11/site-packages/django/core/management/commands/makemigrations.py", line 363, in write_migration_files
healthchecks |     with open(writer.path, "w", encoding="utf-8") as fh:
healthchecks |          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
healthchecks | PermissionError: [Errno 13] Permission denied: '/app/healthchecks/hc/payments/migrations/0009_remove_subscription_next_billing_date_and_more.py'
healthchecks | Operations to perform:
healthchecks |   Apply all migrations: accounts, admin, api, auth, contenttypes, payments, sessions
healthchecks | Running migrations:
healthchecks |   Applying contenttypes.0001_initial... OK
healthchecks |   Applying auth.0001_initial... OK
healthchecks |   Applying accounts.0001_initial... OK
healthchecks |   Applying accounts.0002_profile_ping_log_limit... OK
healthchecks |   Applying accounts.0003_profile_token... OK
healthchecks |   Applying accounts.0004_profile_api_key... OK
healthchecks |   Applying accounts.0005_auto_20160509_0801... OK
healthchecks |   Applying accounts.0006_profile_current_team... OK
healthchecks |   Applying accounts.0007_profile_check_limit... OK
healthchecks |   Applying accounts.0008_profile_bill_to... OK
healthchecks |   Applying accounts.0009_auto_20170714_1734... OK
healthchecks |   Applying accounts.0010_profile_team_limit... OK
healthchecks |   Applying accounts.0011_profile_sort... OK
healthchecks |   Applying accounts.0012_auto_20171014_1002... OK
healthchecks |   Applying accounts.0013_remove_profile_team_access_allowed... OK
healthchecks |   Applying accounts.0014_auto_20171227_1530... OK
healthchecks |   Applying accounts.0015_auto_20181029_1858... OK
healthchecks |   Applying accounts.0016_remove_profile_bill_to... OK
healthchecks |   Applying accounts.0017_auto_20190112_1426... OK
healthchecks |   Applying accounts.0018_auto_20190112_1426... OK
healthchecks |   Applying accounts.0019_project_badge_key... OK
healthchecks |   Applying accounts.0020_auto_20190112_1950... OK
healthchecks |   Applying accounts.0021_auto_20190112_2005... OK
healthchecks |   Applying accounts.0022_auto_20190114_0857... OK
healthchecks |   Applying accounts.0023_auto_20190117_1419... OK
healthchecks |   Applying accounts.0024_auto_20190119_1540... OK
healthchecks |   Applying accounts.0025_remove_member_team... OK
healthchecks |   Applying accounts.0026_auto_20190204_2042... OK
healthchecks |   Applying accounts.0027_profile_deletion_notice_date... OK
healthchecks |   Applying accounts.0028_auto_20191119_1346... OK
healthchecks |   Applying accounts.0029_remove_profile_current_project... OK
healthchecks |   Applying accounts.0030_member_transfer_request_date... OK
healthchecks |   Applying accounts.0031_auto_20200803_1413... OK
healthchecks |   Applying accounts.0032_auto_20200819_0757... OK
healthchecks |   Applying accounts.0033_member_rw... OK
healthchecks |   Applying accounts.0034_credential... OK
healthchecks |   Applying accounts.0035_profile_reports... OK
healthchecks |   Applying accounts.0036_fill_profile_reports... OK
healthchecks |   Applying accounts.0037_profile_tz... OK
healthchecks |   Applying accounts.0038_profile_theme... OK
healthchecks |   Applying accounts.0039_remove_profile_reports_allowed... OK
healthchecks |   Applying accounts.0040_auto_20210722_1244... OK
healthchecks |   Applying accounts.0041_fill_role... OK
healthchecks |   Applying accounts.0042_remove_member_rw... OK
healthchecks |   Applying accounts.0043_add_role_manager... OK
healthchecks |   Applying accounts.0044_auto_20210730_0942... OK
healthchecks |   Applying accounts.0045_auto_20210908_1257... OK
healthchecks |   Applying accounts.0046_profile_deletion_scheduled_date... OK
healthchecks |   Applying accounts.0047_profile_over_limit_date... OK
healthchecks |   Applying accounts.0048_alter_profile_user... OK
healthchecks |   Applying admin.0001_initial... OK
healthchecks |   Applying admin.0002_logentry_remove_auto_add... OK
healthchecks |   Applying admin.0003_logentry_add_action_flag_choices... OK
healthchecks |   Applying api.0001_initial... OK
healthchecks |   Applying api.0002_auto_20150616_0732... OK
healthchecks |   Applying api.0003_auto_20150616_1249... OK
healthchecks |   Applying api.0004_auto_20150616_1319... OK
healthchecks |   Applying api.0005_auto_20150630_2021... OK
healthchecks |   Applying api.0006_check_grace... OK
healthchecks |   Applying api.0007_ping... OK
healthchecks |   Applying api.0008_auto_20150801_1213... OK
healthchecks |   Applying api.0009_auto_20150801_1250... OK
healthchecks |   Applying api.0010_channel... OK
healthchecks |   Applying api.0011_notification... OK
healthchecks |   Applying api.0012_auto_20150930_1922... OK
healthchecks |   Applying api.0013_auto_20151001_2029... OK
healthchecks |   Applying api.0014_auto_20151019_2039... OK
healthchecks |   Applying api.0015_auto_20151022_1008... OK
healthchecks |   Applying api.0016_auto_20151030_1107... OK
healthchecks |   Applying api.0017_auto_20151117_1032... OK
healthchecks |   Applying api.0018_remove_ping_body... OK
healthchecks |   Applying api.0019_check_tags... OK
healthchecks |   Applying api.0020_check_n_pings... OK
healthchecks |   Applying api.0021_ping_n... OK
healthchecks |   Applying api.0022_auto_20160130_2042... OK
healthchecks |   Applying api.0023_auto_20160131_1919... OK
healthchecks |   Applying api.0024_auto_20160203_2227... OK
healthchecks |   Applying api.0025_auto_20160216_1214... OK
healthchecks |   Applying api.0026_auto_20160415_1824... OK
healthchecks |   Applying api.0027_auto_20161213_1059... OK
healthchecks |   Applying api.0028_auto_20170305_1907... OK
healthchecks |   Applying api.0029_auto_20170507_1251... OK
healthchecks |   Applying api.0030_check_last_ping_body... OK
healthchecks |   Applying api.0031_auto_20170509_1320... OK
healthchecks |   Applying api.0032_auto_20170608_1158... OK
healthchecks |   Applying api.0033_auto_20170714_1715... OK
healthchecks |   Applying api.0034_auto_20171227_1530... OK
healthchecks |   Applying api.0035_auto_20171229_2008... OK
healthchecks |   Applying api.0036_auto_20180116_2243... OK
healthchecks |   Applying api.0037_auto_20180127_1215... OK
healthchecks |   Applying api.0038_auto_20180318_1306... OK
healthchecks |   Applying api.0039_remove_check_last_ping_body... OK
healthchecks |   Applying api.0040_auto_20180517_1336... OK
healthchecks |   Applying api.0041_check_desc... OK
healthchecks |   Applying api.0042_auto_20181029_1522... OK
healthchecks |   Applying api.0043_channel_name... OK
healthchecks |   Applying api.0044_auto_20181120_2004... OK
healthchecks |   Applying api.0045_flip... OK
healthchecks |   Applying api.0046_auto_20181218_1245... OK
healthchecks |   Applying api.0047_auto_20181225_2315... OK
healthchecks |   Applying api.0048_auto_20190102_0737... OK
healthchecks |   Applying api.0049_auto_20190102_0743... OK
healthchecks |   Applying api.0050_ping_kind... OK
healthchecks |   Applying api.0051_auto_20190104_0908... OK
healthchecks |   Applying api.0052_auto_20190104_1122... OK
healthchecks |   Applying api.0053_check_subject... OK
healthchecks |   Applying api.0054_auto_20190112_1427... OK
healthchecks |   Applying api.0055_auto_20190112_1427... OK
healthchecks |   Applying api.0056_auto_20190114_0857... OK
healthchecks |   Applying api.0057_auto_20190118_1319... OK
healthchecks |   Applying api.0058_auto_20190312_1716... OK
healthchecks |   Applying api.0059_auto_20190314_1744... OK
healthchecks |   Applying api.0060_tokenbucket... OK
healthchecks |   Applying api.0061_webhook_values... OK
healthchecks |   Applying api.0062_auto_20190720_1350... OK
healthchecks |   Applying api.0063_auto_20190903_0901... OK
healthchecks |   Applying api.0064_auto_20191119_1346... OK
healthchecks |   Applying api.0065_auto_20191127_1240... OK
healthchecks |   Applying api.0066_channel_last_error... OK
healthchecks |   Applying api.0067_last_error_values... OK
healthchecks |   Applying api.0068_auto_20200117_1023... OK
healthchecks |   Applying api.0069_auto_20200117_1227... OK
healthchecks |   Applying api.0070_auto_20200411_1310... OK
healthchecks |   Applying api.0071_check_manual_resume... OK
healthchecks |   Applying api.0072_auto_20200701_1007... OK
healthchecks |   Applying api.0073_auto_20200721_1000... OK
healthchecks |   Applying api.0074_auto_20200803_1411... OK
healthchecks |   Applying api.0075_auto_20200805_1004... OK
healthchecks |   Applying api.0076_auto_20201128_0951... OK
healthchecks |   Applying api.0077_auto_20210506_0755... OK
healthchecks |   Applying api.0078_sms_values... OK
healthchecks |   Applying api.0079_auto_20210907_0918... OK
healthchecks |   Applying api.0080_fill_slug... OK
healthchecks |   Applying api.0081_channel_last_notify... OK
healthchecks |   Applying api.0082_fill_last_notify... OK
healthchecks |   Applying api.0083_channel_disabled... OK
healthchecks |   Applying api.0084_ping_body_raw... OK
healthchecks |   Applying api.0085_ping_object_size... OK
healthchecks |   Applying api.0086_remove_check_last_ping_was_fail_and_more... OK
healthchecks |   Applying api.0087_check_failure_kw_check_filter_body_and_more... OK
healthchecks |   Applying api.0088_fill_kw... OK
healthchecks |   Applying api.0089_remove_check_subject_remove_check_subject_fail... OK
healthchecks |   Applying api.0090_alter_check_filter_subject... OK
healthchecks |   Applying api.0091_alter_check_filter_body... OK
healthchecks |   Applying api.0092_alter_check_success_kw... OK
healthchecks |   Applying api.0093_alter_check_failure_kw... OK
healthchecks |   Applying api.0094_ping_rid_alter_channel_kind... OK
healthchecks |   Applying api.0095_check_last_start_rid... OK
healthchecks |   Applying api.0096_check_start_kw_alter_channel_kind... OK
healthchecks |   Applying api.0097_alter_channel_kind... OK
healthchecks |   Applying api.0098_channel_last_notify_duration... OK
healthchecks |   Applying api.0099_alter_channel_disabled... OK
healthchecks |   Applying api.0100_opsgenie_values... OK
healthchecks |   Applying api.0101_alter_channel_kind... OK
healthchecks |   Applying contenttypes.0002_remove_content_type_name... OK
healthchecks |   Applying auth.0002_alter_permission_name_max_length... OK
healthchecks |   Applying auth.0003_alter_user_email_max_length... OK
healthchecks |   Applying auth.0004_alter_user_username_opts... OK
healthchecks |   Applying auth.0005_alter_user_last_login_null... OK
healthchecks |   Applying auth.0006_require_contenttypes_0002... OK
healthchecks |   Applying auth.0007_alter_validators_add_error_messages... OK
healthchecks |   Applying auth.0008_alter_user_username_max_length... OK
healthchecks |   Applying auth.0009_alter_user_last_name_max_length... OK
healthchecks |   Applying auth.0010_alter_group_name_max_length... OK
healthchecks |   Applying auth.0011_update_proxy_permissions... OK
healthchecks |   Applying auth.0012_alter_user_first_name_max_length... OK
healthchecks |   Applying payments.0001_initial... OK
healthchecks |   Applying payments.0002_subscription_plan_id... OK
healthchecks |   Applying payments.0003_subscription_address_id... OK
healthchecks |   Applying payments.0004_subscription_send_invoices... OK
healthchecks |   Applying payments.0005_subscription_plan_name... OK
healthchecks |   Applying payments.0006_subscription_invoice_email... OK
healthchecks |   Applying payments.0007_auto_20200727_1430... OK
healthchecks |   Applying payments.0008_subscription_setup_date... OK
healthchecks |   Applying sessions.0001_initial... OK
healthchecks | Superuser created.
healthchecks | [custom-init] No custom files found, skipping...
healthchecks | realpath() of uwsgi.ini failed: No such file or directory [core/utils.c line 3662]
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@danieldietsch
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  • Applying migrations manually fixes the errors in the beginning.
  • uwsgi.ini is not in the correct place; cp ./defaults/uwsgi.ini ./app/healthchecks/uwsgi.ini lets the image start (but if this or ./app/healthchecks/docker/uwsgi.ini is the intended one, I dont know)

@wrycta
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wrycta commented Nov 22, 2023 •
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I'm not sure how the s6 overlay & init stuff works exactly, but it looks like the uwsgi.ini file is copied into the app directory in

docker-healthchecks/root/etc/s6-overlay/s6-rc.d/init-healthchecks-config/run

Line 119 in 339b998

mv /defaults/uwsgi.ini /app/healthchecks/uwsgi.ini > /dev/null 2>&1

Removing the end of the line that drops output from the mv command gives:
healthchecks | mv: cannot move '/defaults/uwsgi.ini' to a subdirectory of itself, '/app/healthchecks/uwsgi.ini'

I'm not sure how to proceed from here, but it appears that the ini file is never copied into the app directory.

@thespad thespad mentioned this issue Nov 22, 2023
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@thespad
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thespad commented Nov 22, 2023

Looks like an upstream change broke our init for new installs, the above PR should hopefully fix things.

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Run makemigrations as root, move chown. linuxserver/docker-healthchecks
3 participants
@wrycta @danieldietsch @thespad