From 057459f04a25d78fbcfa4d847a42467ef9921b21 Mon Sep 17 00:00:00 2001 From: Victor Engmark Date: Thu, 14 Dec 2023 13:27:08 +1300 Subject: [PATCH 01/24] build: Bump nixpkgs To latest poetry2nix-compatible commit. --- nix/sources.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/nix/sources.json b/nix/sources.json index ac581372..c3d240fa 100644 --- a/nix/sources.json +++ b/nix/sources.json @@ -5,10 +5,10 @@ "homepage": "", "owner": "NixOS", "repo": "nixpkgs", - "rev": "261abe8a44a7e8392598d038d2e01f7b33cf26d0", - "sha256": "1hpjj75s3xvngn48q27q78syrlg2yfac5hmk2573z6089ajpaxli", + "rev": "736a2546efbaf5648e1b9204cd5c1f0fe05d17ed", + "sha256": "13idpbnxyn60s01rai5ir3ljpzrzm2af4js85nn1x66jw278pwh5", "type": "tarball", - "url": "https://github.com/NixOS/nixpkgs/archive/261abe8a44a7e8392598d038d2e01f7b33cf26d0.tar.gz", + "url": "https://github.com/NixOS/nixpkgs/archive/736a2546efbaf5648e1b9204cd5c1f0fe05d17ed.tar.gz", "url_template": "https://github.com///archive/.tar.gz" } } From 5144e4402ba22b2d49c3be39c1e7a669dfa875a3 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 20 Dec 2023 00:42:23 +0000 Subject: [PATCH 02/24] chore(deps): Bump actions/upload-pages-artifact from 2.0.0 to 3.0.0 Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 2.0.0 to 3.0.0. - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/a753861a5debcf57bf8b404356158c8e1e33150c...0252fc4ba7626f0298f0cf00902a25c6afc77fa8) --- updated-dependencies: - dependency-name: actions/upload-pages-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index b71b5816..af1360ac 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -28,7 +28,7 @@ jobs: - name: Build with Jekyll run: nix-shell --pure --run 'github-pages build --verbose' - name: Upload artifact - uses: actions/upload-pages-artifact@a753861a5debcf57bf8b404356158c8e1e33150c # v2.0.0 + uses: actions/upload-pages-artifact@0252fc4ba7626f0298f0cf00902a25c6afc77fa8 # v3.0.0 deploy: if: From 346d82f702da4f8a23a57d5a5ca8430d75b5e4fc Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 20 Dec 2023 00:42:26 +0000 Subject: [PATCH 03/24] chore(deps): Bump actions/deploy-pages from 3.0.1 to 4.0.0 Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 3.0.1 to 4.0.0. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/13b55b33dd8996121833dbc1db458c793a334630...f33f41b675f0ab2dc5a6863c9a170fe83af3571e) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index af1360ac..b520b90c 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -45,4 +45,4 @@ jobs: steps: - name: Deploy to GitHub Pages id: deployment - uses: actions/deploy-pages@13b55b33dd8996121833dbc1db458c793a334630 # v3.0.1 + uses: actions/deploy-pages@f33f41b675f0ab2dc5a6863c9a170fe83af3571e # v4.0.0 From a775b9c1c084866655a1d3bc092ba52d2a4f2f8a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 21 Dec 2023 00:10:18 +0000 Subject: [PATCH 04/24] chore(deps): Bump rio-tiler in /flooding/sentinel2_water_extraction Bumps [rio-tiler](https://github.com/cogeotiff/rio-tiler) from 6.2.8 to 6.2.9. - [Changelog](https://github.com/cogeotiff/rio-tiler/blob/main/CHANGES.md) - [Commits](https://github.com/cogeotiff/rio-tiler/compare/6.2.8...6.2.9) --- updated-dependencies: - dependency-name: rio-tiler dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- flooding/sentinel2_water_extraction/poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/flooding/sentinel2_water_extraction/poetry.lock b/flooding/sentinel2_water_extraction/poetry.lock index c74d4951..f2db1dfc 100644 --- a/flooding/sentinel2_water_extraction/poetry.lock +++ b/flooding/sentinel2_water_extraction/poetry.lock @@ -2558,13 +2558,13 @@ idna2008 = ["idna"] [[package]] name = "rio-tiler" -version = "6.2.8" +version = "6.2.9" description = "User friendly Rasterio plugin to read raster datasets." optional = false python-versions = ">=3.8" files = [ - {file = "rio_tiler-6.2.8-py3-none-any.whl", hash = "sha256:fbcaa78dd061cd7e5c59582336e319bd13a6269696edacda2e34fe13fb46cb1d"}, - {file = "rio_tiler-6.2.8.tar.gz", hash = "sha256:ea839c838530b9e01143f99b68faaaa765393cfd003a84c2a6f29e51282778ec"}, + {file = "rio_tiler-6.2.9-py3-none-any.whl", hash = "sha256:cfeb0da5c58a18be7121c102e7a53e099ad7c12824b2f4784574c935838484f7"}, + {file = "rio_tiler-6.2.9.tar.gz", hash = "sha256:a8ff9c4a88cda5821e1c2b324b6d9534c92313a803f59921f5851986c5f7ae82"}, ] [package.dependencies] From 0b4c23a16f315677728520a45c07c40e4d6229ef Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 25 Dec 2023 00:29:45 +0000 Subject: [PATCH 05/24] chore(deps): Bump actions/deploy-pages from 4.0.0 to 4.0.2 Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 4.0.0 to 4.0.2. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/f33f41b675f0ab2dc5a6863c9a170fe83af3571e...7a9bd943aa5e5175aeb8502edcc6c1c02d398e10) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index b520b90c..cdc7679e 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -45,4 +45,4 @@ jobs: steps: - name: Deploy to GitHub Pages id: deployment - uses: actions/deploy-pages@f33f41b675f0ab2dc5a6863c9a170fe83af3571e # v4.0.0 + uses: actions/deploy-pages@7a9bd943aa5e5175aeb8502edcc6c1c02d398e10 # v4.0.2 From 3aee656df3c0b31d0442a47b0d871eddbc454298 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 1 Jan 2024 00:26:10 +0000 Subject: [PATCH 06/24] chore(deps): Bump jupyterlab in /flooding/sentinel1_water_extraction Bumps [jupyterlab](https://github.com/jupyterlab/jupyterlab) from 4.0.9 to 4.0.10. - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/@jupyterlab/lsp@4.0.10/CHANGELOG.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.0.9...@jupyterlab/lsp@4.0.10) --- updated-dependencies: - dependency-name: jupyterlab dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- flooding/sentinel1_water_extraction/poetry.lock | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/flooding/sentinel1_water_extraction/poetry.lock b/flooding/sentinel1_water_extraction/poetry.lock index df2f08e9..8e60d332 100644 --- a/flooding/sentinel1_water_extraction/poetry.lock +++ b/flooding/sentinel1_water_extraction/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "anyio" @@ -874,13 +874,13 @@ test = ["coverage", "jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-cov", [[package]] name = "jupyterlab" -version = "4.0.9" +version = "4.0.10" description = "JupyterLab computational environment" optional = false python-versions = ">=3.8" files = [ - {file = "jupyterlab-4.0.9-py3-none-any.whl", hash = "sha256:9f6f8e36d543fdbcc3df961a1d6a3f524b4a4001be0327a398f68fa4e534107c"}, - {file = "jupyterlab-4.0.9.tar.gz", hash = "sha256:9ebada41d52651f623c0c9f069ddb8a21d6848e4c887d8e5ddc0613166ed5c0b"}, + {file = "jupyterlab-4.0.10-py3-none-any.whl", hash = "sha256:fe010ad9e37017488b468632ef2ead255fc7c671c5b64d9ca13e1f7b7e665c37"}, + {file = "jupyterlab-4.0.10.tar.gz", hash = "sha256:46177eb8ede70dc73be922ac99f8ef943bdc2dfbc6a31b353c4bde848a35dee1"}, ] [package.dependencies] @@ -900,7 +900,7 @@ tornado = ">=6.2.0" traitlets = "*" [package.extras] -dev = ["black[jupyter] (==23.10.1)", "build", "bump2version", "coverage", "hatch", "pre-commit", "pytest-cov", "ruff (==0.1.4)"] +dev = ["build", "bump2version", "coverage", "hatch", "pre-commit", "pytest-cov", "ruff (==0.1.6)"] docs = ["jsx-lexer", "myst-parser", "pydata-sphinx-theme (>=0.13.0)", "pytest", "pytest-check-links", "pytest-tornasync", "sphinx (>=1.8,<7.2.0)", "sphinx-copybutton"] docs-screenshots = ["altair (==5.0.1)", "ipython (==8.14.0)", "ipywidgets (==8.0.6)", "jupyterlab-geojson (==3.4.0)", "jupyterlab-language-pack-zh-cn (==4.0.post0)", "matplotlib (==3.7.1)", "nbconvert (>=7.0.0)", "pandas (==2.0.2)", "scipy (==1.10.1)", "vega-datasets (==0.9.0)"] test = ["coverage", "pytest (>=7.0)", "pytest-check-links (>=0.7)", "pytest-console-scripts", "pytest-cov", "pytest-jupyter (>=0.5.3)", "pytest-timeout", "pytest-tornasync", "requests", "requests-cache", "virtualenv"] From e550d187adbd9b0e5a69efa0cac3f558a92ad75d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 9 Jan 2024 00:40:10 +0000 Subject: [PATCH 07/24] chore(deps): Bump rio-tiler in /flooding/sentinel2_water_extraction Bumps [rio-tiler](https://github.com/cogeotiff/rio-tiler) from 6.2.9 to 6.2.10. - [Changelog](https://github.com/cogeotiff/rio-tiler/blob/main/CHANGES.md) - [Commits](https://github.com/cogeotiff/rio-tiler/compare/6.2.9...6.2.10) --- updated-dependencies: - dependency-name: rio-tiler dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- flooding/sentinel2_water_extraction/poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/flooding/sentinel2_water_extraction/poetry.lock b/flooding/sentinel2_water_extraction/poetry.lock index f2db1dfc..885c2e05 100644 --- a/flooding/sentinel2_water_extraction/poetry.lock +++ b/flooding/sentinel2_water_extraction/poetry.lock @@ -2558,13 +2558,13 @@ idna2008 = ["idna"] [[package]] name = "rio-tiler" -version = "6.2.9" +version = "6.2.10" description = "User friendly Rasterio plugin to read raster datasets." optional = false python-versions = ">=3.8" files = [ - {file = "rio_tiler-6.2.9-py3-none-any.whl", hash = "sha256:cfeb0da5c58a18be7121c102e7a53e099ad7c12824b2f4784574c935838484f7"}, - {file = "rio_tiler-6.2.9.tar.gz", hash = "sha256:a8ff9c4a88cda5821e1c2b324b6d9534c92313a803f59921f5851986c5f7ae82"}, + {file = "rio_tiler-6.2.10-py3-none-any.whl", hash = "sha256:06644a22ae19d79b7f546c40527905874a98180a2a66f381f943170a34cdb150"}, + {file = "rio_tiler-6.2.10.tar.gz", hash = "sha256:f376d18d8d75096a7adcfbc0d336627076a7ea57e12a41921b899521113da69b"}, ] [package.dependencies] From a4737f73af5adbd83c127a03a09c412c171cee00 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 12 Jan 2024 00:49:40 +0000 Subject: [PATCH 08/24] chore(deps): Bump actions/deploy-pages from 4.0.2 to 4.0.3 Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 4.0.2 to 4.0.3. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/7a9bd943aa5e5175aeb8502edcc6c1c02d398e10...87c3283f01cd6fe19a0ab93a23b2f6fcba5a8e42) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index cdc7679e..051cb26a 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -45,4 +45,4 @@ jobs: steps: - name: Deploy to GitHub Pages id: deployment - uses: actions/deploy-pages@7a9bd943aa5e5175aeb8502edcc6c1c02d398e10 # v4.0.2 + uses: actions/deploy-pages@87c3283f01cd6fe19a0ab93a23b2f6fcba5a8e42 # v4.0.3 From ddb0a71e9873772f03d7f9d3910662f907d3f44c Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 12 Jan 2024 00:49:45 +0000 Subject: [PATCH 09/24] chore(deps): Bump actions/cache from 3.3.2 to 3.3.3 Bumps [actions/cache](https://github.com/actions/cache) from 3.3.2 to 3.3.3. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/704facf57e6136b1bc63b828d79edcd491f0ee84...e12d46a63a90f2fae62d114769bbf2a179198b5c) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/test.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 223932f5..9f781a2b 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -21,7 +21,7 @@ jobs: authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" - name: Cache pre-commit - uses: actions/cache@704facf57e6136b1bc63b828d79edcd491f0ee84 # v3.3.2 + uses: actions/cache@e12d46a63a90f2fae62d114769bbf2a179198b5c # v3.3.3 with: path: ~/.cache/pre-commit key: @@ -120,7 +120,7 @@ jobs: uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - name: Cache pip packages - uses: actions/cache@704facf57e6136b1bc63b828d79edcd491f0ee84 # v3.3.2 + uses: actions/cache@e12d46a63a90f2fae62d114769bbf2a179198b5c # v3.3.3 with: path: ${{ matrix.pip-cache-dir }} key: @@ -131,7 +131,7 @@ jobs: ${{ runner.os }}-pip-${{ secrets.CACHE_SEED }}-${{ matrix.python }} - name: Cache Conda packages - uses: actions/cache@704facf57e6136b1bc63b828d79edcd491f0ee84 # v3.3.2 + uses: actions/cache@e12d46a63a90f2fae62d114769bbf2a179198b5c # v3.3.3 with: path: ~/conda_pkgs_dir key: From e3ab2a9fc89dc031e2d09381c59c6324df22d750 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Jan 2024 00:59:15 +0000 Subject: [PATCH 10/24] chore(deps): Bump cachix/cachix-action from 13 to 14 Bumps [cachix/cachix-action](https://github.com/cachix/cachix-action) from 13 to 14. - [Release notes](https://github.com/cachix/cachix-action/releases) - [Commits](https://github.com/cachix/cachix-action/compare/6a2e08b5ebf7a9f285ff57b1870a4262b06e0bee...18cf96c7c98e048e10a83abd92116114cd8504be) --- updated-dependencies: - dependency-name: cachix/cachix-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- .github/workflows/test.yml | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index 051cb26a..5553656a 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -21,7 +21,7 @@ jobs: - name: Setup Pages uses: actions/configure-pages@1f0c5cde4bc74cd7e1254d0cb4de8d49e9068c7d # v4.0.0 - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 - - uses: cachix/cachix-action@6a2e08b5ebf7a9f285ff57b1870a4262b06e0bee # v13 + - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: name: linz authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 9f781a2b..e6ff7e21 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -15,7 +15,7 @@ jobs: - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 - - uses: cachix/cachix-action@6a2e08b5ebf7a9f285ff57b1870a4262b06e0bee # v13 + - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: name: linz authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" @@ -48,7 +48,7 @@ jobs: - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 - - uses: cachix/cachix-action@6a2e08b5ebf7a9f285ff57b1870a4262b06e0bee # v13 + - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: name: linz authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" @@ -75,7 +75,7 @@ jobs: - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 - - uses: cachix/cachix-action@6a2e08b5ebf7a9f285ff57b1870a4262b06e0bee # v13 + - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: name: linz authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" From 23a01721f7ddc2200ee1c09624af4ca1be1565cc Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 15 Jan 2024 01:35:22 +0000 Subject: [PATCH 11/24] chore(deps): Bump cachix/install-nix-action from 24 to 25 Bumps [cachix/install-nix-action](https://github.com/cachix/install-nix-action) from 24 to 25. - [Release notes](https://github.com/cachix/install-nix-action/releases) - [Commits](https://github.com/cachix/install-nix-action/compare/7ac1ec25491415c381d9b62f0657c7a028df52a7...6004951b182f8860210c8d6f0d808ec5b1a33d28) --- updated-dependencies: - dependency-name: cachix/install-nix-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- .github/workflows/test.yml | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index 5553656a..fbd7b7e2 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -20,7 +20,7 @@ jobs: uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - name: Setup Pages uses: actions/configure-pages@1f0c5cde4bc74cd7e1254d0cb4de8d49e9068c7d # v4.0.0 - - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 + - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: name: linz diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index e6ff7e21..7cef3394 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -13,7 +13,7 @@ jobs: with: fetch-depth: 0 # Enable gitlint to check all PR commit messages - - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 + - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: @@ -46,7 +46,7 @@ jobs: - name: Check out repository uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 + - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: @@ -73,7 +73,7 @@ jobs: - name: Check out repository uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - - uses: cachix/install-nix-action@7ac1ec25491415c381d9b62f0657c7a028df52a7 # v24 + - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: From 81261e4692ca1bb6eca8cc57fa51d282175ac92e Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 17 Jan 2024 00:07:49 +0000 Subject: [PATCH 12/24] chore(deps): Bump actions/cache from 3.3.3 to 4.0.0 Bumps [actions/cache](https://github.com/actions/cache) from 3.3.3 to 4.0.0. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/e12d46a63a90f2fae62d114769bbf2a179198b5c...13aacd865c20de90d75de3b17ebe84f7a17d57d2) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/test.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 7cef3394..50bbfb53 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -21,7 +21,7 @@ jobs: authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" - name: Cache pre-commit - uses: actions/cache@e12d46a63a90f2fae62d114769bbf2a179198b5c # v3.3.3 + uses: actions/cache@13aacd865c20de90d75de3b17ebe84f7a17d57d2 # v4.0.0 with: path: ~/.cache/pre-commit key: @@ -120,7 +120,7 @@ jobs: uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - name: Cache pip packages - uses: actions/cache@e12d46a63a90f2fae62d114769bbf2a179198b5c # v3.3.3 + uses: actions/cache@13aacd865c20de90d75de3b17ebe84f7a17d57d2 # v4.0.0 with: path: ${{ matrix.pip-cache-dir }} key: @@ -131,7 +131,7 @@ jobs: ${{ runner.os }}-pip-${{ secrets.CACHE_SEED }}-${{ matrix.python }} - name: Cache Conda packages - uses: actions/cache@e12d46a63a90f2fae62d114769bbf2a179198b5c # v3.3.3 + uses: actions/cache@13aacd865c20de90d75de3b17ebe84f7a17d57d2 # v4.0.0 with: path: ~/conda_pkgs_dir key: From 8828009ebdd8ed51563189e512c0f565292eb972 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 31 Jan 2024 00:15:13 +0000 Subject: [PATCH 13/24] chore(deps): Bump jupyterlab in /flooding/sentinel1_water_extraction Bumps [jupyterlab](https://github.com/jupyterlab/jupyterlab) from 4.0.10 to 4.0.12. - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/@jupyterlab/lsp@4.0.12/CHANGELOG.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/lsp@4.0.10...@jupyterlab/lsp@4.0.12) --- updated-dependencies: - dependency-name: jupyterlab dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- flooding/sentinel1_water_extraction/poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/flooding/sentinel1_water_extraction/poetry.lock b/flooding/sentinel1_water_extraction/poetry.lock index 8e60d332..c0592d3e 100644 --- a/flooding/sentinel1_water_extraction/poetry.lock +++ b/flooding/sentinel1_water_extraction/poetry.lock @@ -874,13 +874,13 @@ test = ["coverage", "jupyter-server (>=2.0.0)", "pytest (>=7.0)", "pytest-cov", [[package]] name = "jupyterlab" -version = "4.0.10" +version = "4.0.12" description = "JupyterLab computational environment" optional = false python-versions = ">=3.8" files = [ - {file = "jupyterlab-4.0.10-py3-none-any.whl", hash = "sha256:fe010ad9e37017488b468632ef2ead255fc7c671c5b64d9ca13e1f7b7e665c37"}, - {file = "jupyterlab-4.0.10.tar.gz", hash = "sha256:46177eb8ede70dc73be922ac99f8ef943bdc2dfbc6a31b353c4bde848a35dee1"}, + {file = "jupyterlab-4.0.12-py3-none-any.whl", hash = "sha256:53f132480e5f6564f4e20d1b5ed4e8b7945952a2decd5bdfa43760b1b536c99d"}, + {file = "jupyterlab-4.0.12.tar.gz", hash = "sha256:965d92efa82a538ed70ccb3968d9aabba788840da882e13d7b061780cdedc3b7"}, ] [package.dependencies] From 33bfcd969186d56dbb9003723d5e4b033dd91f56 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 1 Feb 2024 00:50:03 +0000 Subject: [PATCH 14/24] chore(deps): Bump nick-fields/retry from 2.9.0 to 3.0.0 Bumps [nick-fields/retry](https://github.com/nick-fields/retry) from 2.9.0 to 3.0.0. - [Release notes](https://github.com/nick-fields/retry/releases) - [Changelog](https://github.com/nick-fields/retry/blob/master/.releaserc.js) - [Commits](https://github.com/nick-fields/retry/compare/14672906e672a08bd6eeb15720e9ed3ce869cdd4...7152eba30c6575329ac0576536151aca5a72780e) --- updated-dependencies: - dependency-name: nick-fields/retry dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 50bbfb53..a022d1c9 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -163,7 +163,7 @@ jobs: - name: Install Python packages on Windows runner (Workaround for https://github.com/python-poetry/poetry/issues/1031) - uses: nick-fields/retry@14672906e672a08bd6eeb15720e9ed3ce869cdd4 # v2.9.0 + uses: nick-fields/retry@7152eba30c6575329ac0576536151aca5a72780e # v3.0.0 with: timeout_minutes: 9999 # Workaround for https://github.com/nick-fields/retry/issues/107 max_attempts: 6 From 6918f1a7300804efa2b4807ac8cf9c9a3406deea Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 6 Feb 2024 00:48:46 +0000 Subject: [PATCH 15/24] chore(deps): Bump actions/deploy-pages from 4.0.3 to 4.0.4 Bumps [actions/deploy-pages](https://github.com/actions/deploy-pages) from 4.0.3 to 4.0.4. - [Release notes](https://github.com/actions/deploy-pages/releases) - [Commits](https://github.com/actions/deploy-pages/compare/87c3283f01cd6fe19a0ab93a23b2f6fcba5a8e42...decdde0ac072f6dcbe43649d82d9c635fff5b4e4) --- updated-dependencies: - dependency-name: actions/deploy-pages dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index fbd7b7e2..0073b545 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -45,4 +45,4 @@ jobs: steps: - name: Deploy to GitHub Pages id: deployment - uses: actions/deploy-pages@87c3283f01cd6fe19a0ab93a23b2f6fcba5a8e42 # v4.0.3 + uses: actions/deploy-pages@decdde0ac072f6dcbe43649d82d9c635fff5b4e4 # v4.0.4 From 097e65c3c755563c6deb89e01a221374a6840ed7 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 8 Feb 2024 00:58:13 +0000 Subject: [PATCH 16/24] chore(deps): Bump actions/upload-pages-artifact from 3.0.0 to 3.0.1 Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 3.0.0 to 3.0.1. - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/0252fc4ba7626f0298f0cf00902a25c6afc77fa8...56afc609e74202658d3ffba0e8f6dda462b719fa) --- updated-dependencies: - dependency-name: actions/upload-pages-artifact dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index 0073b545..8ceb52e5 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -28,7 +28,7 @@ jobs: - name: Build with Jekyll run: nix-shell --pure --run 'github-pages build --verbose' - name: Upload artifact - uses: actions/upload-pages-artifact@0252fc4ba7626f0298f0cf00902a25c6afc77fa8 # v3.0.0 + uses: actions/upload-pages-artifact@56afc609e74202658d3ffba0e8f6dda462b719fa # v3.0.1 deploy: if: From 159902f188cb471d73fd1c6ba1bfc332d4b8d956 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 19 Feb 2024 00:31:49 +0000 Subject: [PATCH 17/24] chore(deps): Bump matplotlib in /flooding/sentinel2_water_extraction Bumps [matplotlib](https://github.com/matplotlib/matplotlib) from 3.7.4 to 3.7.5. - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](https://github.com/matplotlib/matplotlib/compare/v3.7.4...v3.7.5) --- updated-dependencies: - dependency-name: matplotlib dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .../sentinel2_water_extraction/poetry.lock | 96 +++++++++---------- 1 file changed, 48 insertions(+), 48 deletions(-) diff --git a/flooding/sentinel2_water_extraction/poetry.lock b/flooding/sentinel2_water_extraction/poetry.lock index 885c2e05..378c681d 100644 --- a/flooding/sentinel2_water_extraction/poetry.lock +++ b/flooding/sentinel2_water_extraction/poetry.lock @@ -1313,58 +1313,58 @@ files = [ [[package]] name = "matplotlib" -version = "3.7.4" +version = "3.7.5" description = "Python plotting package" optional = false python-versions = ">=3.8" files = [ - {file = "matplotlib-3.7.4-cp310-cp310-macosx_10_12_universal2.whl", hash = "sha256:b71079239bd866bf56df023e5146de159cb0c7294e508830901f4d79e2d89385"}, - {file = "matplotlib-3.7.4-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:bf91a42f6274a64cb41189120b620c02e574535ff6671fa836cade7701b06fbd"}, - {file = "matplotlib-3.7.4-cp310-cp310-macosx_11_0_arm64.whl", hash = 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"shapely-2.0.3-cp39-cp39-win_amd64.whl", hash = "sha256:5026b30433a70911979d390009261b8c4021ff87c7c3cbd825e62bb2ffa181bc"}, + {file = "shapely-2.0.3.tar.gz", hash = "sha256:4d65d0aa7910af71efa72fd6447e02a8e5dd44da81a983de9d736d6e6ccbe674"}, +] + +[package.dependencies] +numpy = ">=1.14,<2" [package.extras] docs = ["matplotlib", "numpydoc (==1.1.*)", "sphinx", "sphinx-book-theme", "sphinx-remove-toctrees"] From ac798e4efd385a4f466413edd32aa1bc4c772355 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 23 Feb 2024 01:02:03 +0000 Subject: [PATCH 19/24] chore(deps): Bump conda-incubator/setup-miniconda from 3.0.1 to 3.0.2 Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.1 to 3.0.2. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](https://github.com/conda-incubator/setup-miniconda/compare/11b562958363ec5770fef326fe8ef0366f8cbf8a...392cf345b1784333caa1a1185081c71e6ffd61bc) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a022d1c9..2a775989 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -147,7 +147,7 @@ jobs: echo "GDAL_VERSION=$GDAL_VERSION" >> $GITHUB_ENV - name: Setup Conda - uses: conda-incubator/setup-miniconda@11b562958363ec5770fef326fe8ef0366f8cbf8a # v3.0.1 + uses: conda-incubator/setup-miniconda@392cf345b1784333caa1a1185081c71e6ffd61bc # v3.0.2 with: channels: conda-forge python-version: ${{ matrix.python }} From cbd75f77fffe0aa13fe14ac66731983fa17a9d20 Mon Sep 17 00:00:00 2001 From: Victor Engmark Date: Wed, 21 Feb 2024 09:45:38 +1300 Subject: [PATCH 20/24] refactor: Pin nixpkgs without Niv Involves a lot less code in the build process. --- .envrc | 2 +- .pre-commit-config.yaml | 3 +- flooding/sentinel1_water_extraction/shell.nix | 3 +- flooding/sentinel2_water_extraction/shell.nix | 3 +- .../shell.nix | 3 +- nix/sources.json | 14 - nix/sources.nix | 248 ------------------ nixpkgs.nix | 6 + shell.nix | 4 +- 9 files changed, 12 insertions(+), 274 deletions(-) delete mode 100644 nix/sources.json delete mode 100644 nix/sources.nix create mode 100644 nixpkgs.nix diff --git a/.envrc b/.envrc index 829ffa2b..df92365c 100644 --- a/.envrc +++ b/.envrc @@ -1,4 +1,4 @@ #!/usr/bin/env bash -nix_direnv_watch_file nix ./*.nix ./*/*.nix ./*/*/*.nix ./*/*/poetry.lock ./*/*/pyproject.toml +nix_direnv_watch_file ./*.nix ./*/*.nix ./*/*/*.nix ./*/*/poetry.lock ./*/*/pyproject.toml use nix ln --force --no-target-directory --symbolic "$(which python)" python diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 326afd97..03bdfe98 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -26,7 +26,6 @@ repos: entry: deadnix args: [--edit, --fail] files: \.nix$ - exclude: ^nix/sources\.nix$ language: system stages: [commit] @@ -148,7 +147,7 @@ repos: - id: statix name: statix entry: statix - args: [check, --ignore=nix/sources.nix] + args: [check] files: \.nix$ pass_filenames: false language: system diff --git a/flooding/sentinel1_water_extraction/shell.nix b/flooding/sentinel1_water_extraction/shell.nix index 68e0ff19..95c063ff 100644 --- a/flooding/sentinel1_water_extraction/shell.nix +++ b/flooding/sentinel1_water_extraction/shell.nix @@ -1,6 +1,5 @@ let - sources = import ../../nix/sources.nix; - pkgs = import sources.nixpkgs {}; + pkgs = import ../../nixpkgs.nix; python = import ../../python.nix { inherit pkgs; }; diff --git a/flooding/sentinel2_water_extraction/shell.nix b/flooding/sentinel2_water_extraction/shell.nix index 68e0ff19..95c063ff 100644 --- a/flooding/sentinel2_water_extraction/shell.nix +++ b/flooding/sentinel2_water_extraction/shell.nix @@ -1,6 +1,5 @@ let - sources = import ../../nix/sources.nix; - pkgs = import sources.nixpkgs {}; + pkgs = import ../../nixpkgs.nix; python = import ../../python.nix { inherit pkgs; }; diff --git a/machine-readable-to-human-readable-date-time/shell.nix b/machine-readable-to-human-readable-date-time/shell.nix index 02bd5fd5..24027c46 100644 --- a/machine-readable-to-human-readable-date-time/shell.nix +++ b/machine-readable-to-human-readable-date-time/shell.nix @@ -1,6 +1,5 @@ let - sources = import ../nix/sources.nix; - pkgs = import sources.nixpkgs {}; + pkgs = import ../nixpkgs.nix; in pkgs.mkShell { packages = [ diff --git a/nix/sources.json b/nix/sources.json deleted file mode 100644 index c3d240fa..00000000 --- a/nix/sources.json +++ /dev/null @@ -1,14 +0,0 @@ -{ - "nixpkgs": { - "branch": "nixos-23.05", - "description": "Nix Packages collection", - "homepage": "", - "owner": "NixOS", - "repo": "nixpkgs", - "rev": "736a2546efbaf5648e1b9204cd5c1f0fe05d17ed", - "sha256": "13idpbnxyn60s01rai5ir3ljpzrzm2af4js85nn1x66jw278pwh5", - "type": "tarball", - "url": "https://github.com/NixOS/nixpkgs/archive/736a2546efbaf5648e1b9204cd5c1f0fe05d17ed.tar.gz", - "url_template": "https://github.com///archive/.tar.gz" - } -} diff --git a/nix/sources.nix b/nix/sources.nix deleted file mode 100644 index f86fe892..00000000 --- a/nix/sources.nix +++ /dev/null @@ -1,248 +0,0 @@ -# This file has been generated by Niv. -let - # - # The fetchers. fetch_ fetches specs of type . - # - fetch_file = pkgs: name: spec: let - name' = sanitizeName name + "-src"; - in - if spec.builtin or true - then - builtins_fetchurl { - inherit (spec) url sha256; - name = name'; - } - else - pkgs.fetchurl { - inherit (spec) url sha256; - name = name'; - }; - - fetch_tarball = pkgs: name: spec: let - name' = sanitizeName name + "-src"; - in - if spec.builtin or true - then - builtins_fetchTarball { - name = name'; - inherit (spec) url sha256; - } - else - pkgs.fetchzip { - name = name'; - inherit (spec) url sha256; - }; - - fetch_git = name: spec: let - ref = - if spec ? ref - then spec.ref - else if spec ? branch - then "refs/heads/${spec.branch}" - else if spec ? tag - then "refs/tags/${spec.tag}" - else abort "In git source '${name}': Please specify `ref`, `tag` or `branch`!"; - submodules = - if spec ? submodules - then spec.submodules - else false; - submoduleArg = let - nixSupportsSubmodules = builtins.compareVersions builtins.nixVersion "2.4" >= 0; - emptyArgWithWarning = - if submodules == true - then - builtins.trace - ( - "The niv input \"${name}\" uses submodules " - + "but your nix's (${builtins.nixVersion}) builtins.fetchGit " - + "does not support them" - ) - {} - else {}; - in - if nixSupportsSubmodules - then {inherit submodules;} - else emptyArgWithWarning; - in - builtins.fetchGit - ({ - url = spec.repo; - inherit (spec) rev; - inherit ref; - } - // submoduleArg); - - fetch_local = spec: spec.path; - - fetch_builtin-tarball = name: - throw - '' [${name}] The niv type "builtin-tarball" is deprecated. You should instead use `builtin = true`. - $ niv modify ${name} -a type=tarball -a builtin=true''; - - fetch_builtin-url = name: - throw - '' [${name}] The niv type "builtin-url" will soon be deprecated. You should instead use `builtin = true`. - $ niv modify ${name} -a type=file -a builtin=true''; - - # - # Various helpers - # - - # https://github.com/NixOS/nixpkgs/pull/83241/files#diff-c6f540a4f3bfa4b0e8b6bafd4cd54e8bR695 - sanitizeName = name: ( - concatMapStrings (s: - if builtins.isList s - then "-" - else s) - ( - builtins.split "[^[:alnum:]+._?=-]+" - ((x: builtins.elemAt (builtins.match "\\.*(.*)" x) 0) name) - ) - ); - - # The set of packages used when specs are fetched using non-builtins. - mkPkgs = sources: system: let - sourcesNixpkgs = - import (builtins_fetchTarball {inherit (sources.nixpkgs) url sha256;}) {inherit system;}; - hasNixpkgsPath = builtins.any (x: x.prefix == "nixpkgs") builtins.nixPath; - hasThisAsNixpkgsPath = == ./.; - in - if builtins.hasAttr "nixpkgs" sources - then sourcesNixpkgs - else if hasNixpkgsPath && ! hasThisAsNixpkgsPath - then import {} - else - abort - '' - Please specify either (through -I or NIX_PATH=nixpkgs=...) or - add a package called "nixpkgs" to your sources.json. - ''; - - # The actual fetching function. - fetch = pkgs: name: spec: - if ! builtins.hasAttr "type" spec - then abort "ERROR: niv spec ${name} does not have a 'type' attribute" - else if spec.type == "file" - then fetch_file pkgs name spec - else if spec.type == "tarball" - then fetch_tarball pkgs name spec - else if spec.type == "git" - then fetch_git name spec - else if spec.type == "local" - then fetch_local spec - else if spec.type == "builtin-tarball" - then fetch_builtin-tarball name - else if spec.type == "builtin-url" - then fetch_builtin-url name - else abort "ERROR: niv spec ${name} has unknown type ${builtins.toJSON spec.type}"; - - # If the environment variable NIV_OVERRIDE_${name} is set, then use - # the path directly as opposed to the fetched source. - replace = name: drv: let - saneName = stringAsChars (c: - if isNull (builtins.match "[a-zA-Z0-9]" c) - then "_" - else c) - name; - ersatz = builtins.getEnv "NIV_OVERRIDE_${saneName}"; - in - if ersatz == "" - then drv - else - # this turns the string into an actual Nix path (for both absolute and - # relative paths) - if builtins.substring 0 1 ersatz == "/" - then /. + ersatz - else /. + builtins.getEnv "PWD" + "/${ersatz}"; - - # Ports of functions for older nix versions - - # a Nix version of mapAttrs if the built-in doesn't exist - mapAttrs = - builtins.mapAttrs - or ( - f: set: - with builtins; - listToAttrs (map (attr: { - name = attr; - value = f attr set.${attr}; - }) (attrNames set)) - ); - - # https://github.com/NixOS/nixpkgs/blob/0258808f5744ca980b9a1f24fe0b1e6f0fecee9c/lib/lists.nix#L295 - range = first: last: - if first > last - then [] - else builtins.genList (n: first + n) (last - first + 1); - - # https://github.com/NixOS/nixpkgs/blob/0258808f5744ca980b9a1f24fe0b1e6f0fecee9c/lib/strings.nix#L257 - stringToCharacters = s: map (p: builtins.substring p 1 s) (range 0 (builtins.stringLength s - 1)); - - # https://github.com/NixOS/nixpkgs/blob/0258808f5744ca980b9a1f24fe0b1e6f0fecee9c/lib/strings.nix#L269 - stringAsChars = f: s: concatStrings (map f (stringToCharacters s)); - concatMapStrings = f: list: concatStrings (map f list); - concatStrings = builtins.concatStringsSep ""; - - # https://github.com/NixOS/nixpkgs/blob/8a9f58a375c401b96da862d969f66429def1d118/lib/attrsets.nix#L331 - optionalAttrs = cond: as: - if cond - then as - else {}; - - # fetchTarball version that is compatible between all the versions of Nix - builtins_fetchTarball = { - url, - name ? null, - sha256, - } @ attrs: let - inherit (builtins) lessThan nixVersion fetchTarball; - in - if lessThan nixVersion "1.12" - then fetchTarball ({inherit url;} // (optionalAttrs (!isNull name) {inherit name;})) - else fetchTarball attrs; - - # fetchurl version that is compatible between all the versions of Nix - builtins_fetchurl = { - url, - name ? null, - sha256, - } @ attrs: let - inherit (builtins) lessThan nixVersion fetchurl; - in - if lessThan nixVersion "1.12" - then fetchurl ({inherit url;} // (optionalAttrs (!isNull name) {inherit name;})) - else fetchurl attrs; - - # Create the final "sources" from the config - mkSources = config: - mapAttrs ( - name: spec: - if builtins.hasAttr "outPath" spec - then - abort - "The values in sources.json should not have an 'outPath' attribute" - else spec // {outPath = replace name (fetch config.pkgs name spec);} - ) - config.sources; - - # The "config" used by the fetchers - mkConfig = { - sourcesFile ? - if builtins.pathExists ./sources.json - then ./sources.json - else null, - sources ? - if isNull sourcesFile - then {} - else builtins.fromJSON (builtins.readFile sourcesFile), - system ? builtins.currentSystem, - pkgs ? mkPkgs sources system, - }: rec { - # The sources, i.e. the attribute set of spec name to spec - inherit sources; - - # The "pkgs" (evaluated nixpkgs) to use for e.g. non-builtin fetchers - inherit pkgs; - }; -in - mkSources (mkConfig {}) // {__functor = _: settings: mkSources (mkConfig settings);} diff --git a/nixpkgs.nix b/nixpkgs.nix new file mode 100644 index 00000000..0a3e58b7 --- /dev/null +++ b/nixpkgs.nix @@ -0,0 +1,6 @@ +import ( + builtins.fetchTarball { + url = "https://github.com/nixos/nixpkgs/archive/736a2546efbaf5648e1b9204cd5c1f0fe05d17ed.tar.gz"; + sha256 = "13idpbnxyn60s01rai5ir3ljpzrzm2af4js85nn1x66jw278pwh5"; + } +) {} diff --git a/shell.nix b/shell.nix index 33d5c00a..0748573b 100644 --- a/shell.nix +++ b/shell.nix @@ -1,6 +1,5 @@ let - sources = import ./nix/sources.nix; - pkgs = import sources.nixpkgs {}; + pkgs = import ./nixpkgs.nix; python = import ./python.nix { inherit pkgs; }; @@ -41,7 +40,6 @@ in pkgs.gitFull pkgs.gitlint pkgs.nbqa - pkgs.niv pkgs.nodePackages.prettier pkgs.pre-commit pkgs.python3Packages.pydocstyle From 228b84aaf4b72e832b24d7d1810df6409e1d3e58 Mon Sep 17 00:00:00 2001 From: Victor Engmark Date: Wed, 21 Feb 2024 09:47:43 +1300 Subject: [PATCH 21/24] refactor: Replace deprecated command --- .envrc | 2 +- flooding/sentinel1_water_extraction/.envrc | 2 +- flooding/sentinel2_water_extraction/.envrc | 2 +- machine-readable-to-human-readable-date-time/.envrc | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.envrc b/.envrc index df92365c..03e7fa14 100644 --- a/.envrc +++ b/.envrc @@ -1,4 +1,4 @@ #!/usr/bin/env bash -nix_direnv_watch_file ./*.nix ./*/*.nix ./*/*/*.nix ./*/*/poetry.lock ./*/*/pyproject.toml +watch_file ./*.nix ./*/*.nix ./*/*/*.nix ./*/*/poetry.lock ./*/*/pyproject.toml use nix ln --force --no-target-directory --symbolic "$(which python)" python diff --git a/flooding/sentinel1_water_extraction/.envrc b/flooding/sentinel1_water_extraction/.envrc index fc98477a..0a30bab6 100644 --- a/flooding/sentinel1_water_extraction/.envrc +++ b/flooding/sentinel1_water_extraction/.envrc @@ -1,3 +1,3 @@ #!/usr/bin/env bash -nix_direnv_watch_file ../../nix ./*.nix ./poetry.lock ./pyproject.toml +watch_file ../../nix ./*.nix ./poetry.lock ./pyproject.toml use nix diff --git a/flooding/sentinel2_water_extraction/.envrc b/flooding/sentinel2_water_extraction/.envrc index fc98477a..0a30bab6 100644 --- a/flooding/sentinel2_water_extraction/.envrc +++ b/flooding/sentinel2_water_extraction/.envrc @@ -1,3 +1,3 @@ #!/usr/bin/env bash -nix_direnv_watch_file ../../nix ./*.nix ./poetry.lock ./pyproject.toml +watch_file ../../nix ./*.nix ./poetry.lock ./pyproject.toml use nix diff --git a/machine-readable-to-human-readable-date-time/.envrc b/machine-readable-to-human-readable-date-time/.envrc index d901a9d8..9dd5d9d1 100644 --- a/machine-readable-to-human-readable-date-time/.envrc +++ b/machine-readable-to-human-readable-date-time/.envrc @@ -1,3 +1,3 @@ #!/usr/bin/env bash -nix_direnv_watch_file ../nix +watch_file ../nix use nix From 1c6d00684c1e77eb7c124b64aca86c2e1ba4ae69 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 29 Feb 2024 00:59:38 +0000 Subject: [PATCH 22/24] chore(deps): Bump conda-incubator/setup-miniconda from 3.0.2 to 3.0.3 Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 3.0.2 to 3.0.3. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](https://github.com/conda-incubator/setup-miniconda/compare/392cf345b1784333caa1a1185081c71e6ffd61bc...030178870c779d9e5e1b4e563269f3aa69b04081) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 2a775989..c71f92dc 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -147,7 +147,7 @@ jobs: echo "GDAL_VERSION=$GDAL_VERSION" >> $GITHUB_ENV - name: Setup Conda - uses: conda-incubator/setup-miniconda@392cf345b1784333caa1a1185081c71e6ffd61bc # v3.0.2 + uses: conda-incubator/setup-miniconda@030178870c779d9e5e1b4e563269f3aa69b04081 # v3.0.3 with: channels: conda-forge python-version: ${{ matrix.python }} From 88de1a26156454d97d01da3cd1419137d6693b9e Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 1 Mar 2024 01:03:44 +0000 Subject: [PATCH 23/24] chore(deps): Bump actions/cache from 4.0.0 to 4.0.1 Bumps [actions/cache](https://github.com/actions/cache) from 4.0.0 to 4.0.1. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/13aacd865c20de90d75de3b17ebe84f7a17d57d2...ab5e6d0c87105b4c9c2047343972218f562e4319) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- .github/workflows/test.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index c71f92dc..94e8418d 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -21,7 +21,7 @@ jobs: authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" - name: Cache pre-commit - uses: actions/cache@13aacd865c20de90d75de3b17ebe84f7a17d57d2 # v4.0.0 + uses: actions/cache@ab5e6d0c87105b4c9c2047343972218f562e4319 # v4.0.1 with: path: ~/.cache/pre-commit key: @@ -120,7 +120,7 @@ jobs: uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - name: Cache pip packages - uses: actions/cache@13aacd865c20de90d75de3b17ebe84f7a17d57d2 # v4.0.0 + uses: actions/cache@ab5e6d0c87105b4c9c2047343972218f562e4319 # v4.0.1 with: path: ${{ matrix.pip-cache-dir }} key: @@ -131,7 +131,7 @@ jobs: ${{ runner.os }}-pip-${{ secrets.CACHE_SEED }}-${{ matrix.python }} - name: Cache Conda packages - uses: actions/cache@13aacd865c20de90d75de3b17ebe84f7a17d57d2 # v4.0.0 + uses: actions/cache@ab5e6d0c87105b4c9c2047343972218f562e4319 # v4.0.1 with: path: ~/conda_pkgs_dir key: From 77271f022fe3f0aac45742434fdc7a80ea724a66 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 11 Mar 2024 00:11:55 +0000 Subject: [PATCH 24/24] chore(deps): Bump cachix/install-nix-action from 25 to 26 Bumps [cachix/install-nix-action](https://github.com/cachix/install-nix-action) from 25 to 26. - [Release notes](https://github.com/cachix/install-nix-action/releases) - [Commits](https://github.com/cachix/install-nix-action/compare/6004951b182f8860210c8d6f0d808ec5b1a33d28...8887e596b4ee1134dae06b98d573bd674693f47c) --- updated-dependencies: - dependency-name: cachix/install-nix-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/jekyll-gh-pages.yml | 2 +- .github/workflows/test.yml | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/jekyll-gh-pages.yml b/.github/workflows/jekyll-gh-pages.yml index 8ceb52e5..633a00b7 100644 --- a/.github/workflows/jekyll-gh-pages.yml +++ b/.github/workflows/jekyll-gh-pages.yml @@ -20,7 +20,7 @@ jobs: uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - name: Setup Pages uses: actions/configure-pages@1f0c5cde4bc74cd7e1254d0cb4de8d49e9068c7d # v4.0.0 - - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 + - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: name: linz diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 94e8418d..cfa23b63 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -13,7 +13,7 @@ jobs: with: fetch-depth: 0 # Enable gitlint to check all PR commit messages - - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 + - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: @@ -46,7 +46,7 @@ jobs: - name: Check out repository uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 + - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: @@ -73,7 +73,7 @@ jobs: - name: Check out repository uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 - - uses: cachix/install-nix-action@6004951b182f8860210c8d6f0d808ec5b1a33d28 # v25 + - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 with: