From 08bccd1d35d95ea2adaf7dfd2787538b40ee592c Mon Sep 17 00:00:00 2001 From: Victor Engmark Date: Thu, 16 May 2024 11:26:25 +1200 Subject: [PATCH 1/2] build: Bump Python packages Challenges: - Had to hold back GDAL from 3.9 because it's not yet in nixpkgs . - Had to hold back numexpr from 2.10 because it's not yet in nixpkgs . - Had to hold back matplotlib from 3.9 because it needs a poetry2nix override . - Had to force sat-search version 0.3.0 to avoid Poetry downgrading it to 0.1.0. - Had to add Cython 0 to the color-operations build inputs . Script: ```bash cd flooding/sentinel2_water_extraction poetry add --lock gdal="<3.9" matplotlib="<3.9" numexpr="<2.10" sat-search=">=0.3.0" poetry update --lock git checkout pyproject.toml poetry lock --no-update cd ../sentinel1_water_extraction/ poetry add --lock gdal="<3.9" poetry update --lock git checkout pyproject.toml poetry lock --no-update ``` --- .../sentinel1_water_extraction/poetry.lock | 1463 ++++----- flooding/sentinel2_water_extraction/README.md | 2 +- .../sentinel2_water_extraction/poetry.lock | 2691 +++++++++-------- .../poetryPackages.nix | 10 + 4 files changed, 2197 insertions(+), 1969 deletions(-) diff --git a/flooding/sentinel1_water_extraction/poetry.lock b/flooding/sentinel1_water_extraction/poetry.lock index f4ed019..ada169d 100644 --- a/flooding/sentinel1_water_extraction/poetry.lock +++ b/flooding/sentinel1_water_extraction/poetry.lock @@ -1,54 +1,57 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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"sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] [metadata] lock-version = "2.0" diff --git a/flooding/sentinel2_water_extraction/README.md b/flooding/sentinel2_water_extraction/README.md index 9a99c20..7746cbb 100644 --- a/flooding/sentinel2_water_extraction/README.md +++ b/flooding/sentinel2_water_extraction/README.md @@ -42,7 +42,7 @@ If you can't use Nix, you will need the following. For each prerequisite, the - Windows (tested on Windows Server 2022) - [Python](https://www.python.org/downloads/) (tested with 3.9 and 3.11) - [Poetry](https://python-poetry.org/docs/#installation) (tested with 1.8.3) -- [GDAL](https://gdal.org/download.html) (tested with 3.6.4) +- [GDAL](https://gdal.org/download.html) (tested with 3.8.5) Once you have all of the above, `cd [emergency-management-tools path]/flooding/sentinel2_water_extraction` and diff --git a/flooding/sentinel2_water_extraction/poetry.lock b/flooding/sentinel2_water_extraction/poetry.lock index 1639382..fa4599e 100644 --- a/flooding/sentinel2_water_extraction/poetry.lock +++ b/flooding/sentinel2_water_extraction/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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"more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] [metadata] lock-version = "2.0" diff --git a/flooding/sentinel2_water_extraction/poetryPackages.nix b/flooding/sentinel2_water_extraction/poetryPackages.nix index a9471ba..6dc04e2 100644 --- a/flooding/sentinel2_water_extraction/poetryPackages.nix +++ b/flooding/sentinel2_water_extraction/poetryPackages.nix @@ -8,4 +8,14 @@ poetry2nix.mkPoetryPackages { path = ./.; name = "sentinel2_water_extraction_packages"; }; + overrides = poetry2nix.overrides.withDefaults (self: super: { + color-operations = super.color-operations.overridePythonAttrs (old: { + # https://github.com/nix-community/poetry2nix/pull/1658 + nativeBuildInputs = (old.nativeBuildInputs or []) ++ [self.cython_0]; + }); + jupyter-server = super.jupyter-server.overridePythonAttrs (old: { + # Already in poetry2nix but needed here because we're mixing old and new versions of jupyter-server + nativeBuildInputs = (old.nativeBuildInputs or []) ++ [self.jupyter-packaging]; + }); + }); } From 5087a349fa31163dd38c19132d58142d758b5242 Mon Sep 17 00:00:00 2001 From: Victor Engmark Date: Mon, 9 Oct 2023 15:28:10 +1300 Subject: [PATCH 2/2] build: Support Python 3.12 --- .github/workflows/test.yml | 1 + flooding/sentinel2_water_extraction/README.md | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a414ba4..e9fb24a 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -106,6 +106,7 @@ jobs: python: - "3.9" - "3.11" + - "3.12" sentinel: - "1" - "2" diff --git a/flooding/sentinel2_water_extraction/README.md b/flooding/sentinel2_water_extraction/README.md index 7746cbb..a472961 100644 --- a/flooding/sentinel2_water_extraction/README.md +++ b/flooding/sentinel2_water_extraction/README.md @@ -40,7 +40,7 @@ If you can't use Nix, you will need the following. For each prerequisite, the - Linux (tested on Ubuntu 22.04, Jammy Jellyfish and 24.04, Noble Numbat) - macOS (tested on version 12, Monterey) - Windows (tested on Windows Server 2022) -- [Python](https://www.python.org/downloads/) (tested with 3.9 and 3.11) +- [Python](https://www.python.org/downloads/) (tested with 3.9, 3.11 and 3.12) - [Poetry](https://python-poetry.org/docs/#installation) (tested with 1.8.3) - [GDAL](https://gdal.org/download.html) (tested with 3.8.5)