Question for command line version of Krait？

[Zjianglin]

Dear developers,
Krait is really an excellent tool for STR detection. I'd like to know is there any version of command line version of Krait for us, because I want to analysis many genomes.
In addition , I encountered many times crash down when I try to import a fasta file. The stderr output is

(Krait:25246): Gtk-WARNING **: GModule (/usr/lib/x86_64-linux-gnu/gtk-3.0/3.0.0/immodules/im-fcitx.so) initialization check failed: GLib version too old (micro mismatch)

(Krait:25246): Gtk-WARNING **: Loading IM context type 'fcitx' failed

(Krait:25246): GLib-GIO-WARNING **: unknown schema extension 'd'

(Krait:25246): GLib-GIO-WARNING **: unknown schema extension 'd'

(Krait:25246): Gtk-WARNING **: GModule (/usr/lib/x86_64-linux-gnu/gtk-3.0/3.0.0/immodules/im-fcitx.so) initialization check failed: GLib version too old (micro mismatch)

(Krait:25246): Gtk-WARNING **: Loading IM context type 'fcitx' failed

(Krait:25246): Gtk-WARNING **: GModule (/usr/lib/x86_64-linux-gnu/gtk-3.0/3.0.0/immodules/im-fcitx.so) initialization check failed: GLib version too old (micro mismatch)

(Krait:25246): Gtk-WARNING **: Loading IM context type 'fcitx' failed

(Krait:25246): Gtk-WARNING **: GModule (/usr/lib/x86_64-linux-gnu/gtk-3.0/3.0.0/immodules/im-fcitx.so) initialization check failed: GLib version too old (micro mismatch)

(Krait:25246): Gtk-WARNING **: Loading IM context type 'fcitx' failed

(Krait:25246): Gtk-WARNING **: Error loading image 'file:///usr/share/themes/Ambiance/gtk-3.0/assets/button-active.png': Unable to load image-loading module: /usr/lib/x86_64-linux-gnu/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-png.so: /data/amax81t/packages/Krait/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)

(Krait:25246): Gtk-WARNING **: Error loading image 'file:///usr/share/themes/Ambiance/gtk-3.0/assets/button.png': Unable to load image-loading module: /usr/lib/x86_64-linux-gnu/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-png.so: /data/amax81t/packages/Krait/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)

(Krait:25246): Gtk-WARNING **: Error loading image 'file:///usr/share/themes/Ambiance/gtk-3.0/assets/button-disabled.png': Unable to load image-loading module: /usr/lib/x86_64-linux-gnu/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-png.so: /data/amax81t/packages/Krait/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)

(Krait:25246): Gtk-WARNING **: Error loading image 'file:///usr/share/themes/Ambiance/gtk-3.0/assets/button-toolbar.png': Unable to load image-loading module: /usr/lib/x86_64-linux-gnu/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-png.so: /data/amax81t/packages/Krait/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)

(Krait:25246): Gtk-WARNING **: Error loading image 'file:///usr/share/themes/Ambiance/gtk-3.0/assets/button-default-hover.png': Unable to load image-loading module: /usr/lib/x86_64-linux-gnu/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-png.so: /data/amax81t/packages/Krait/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)

(Krait:25246): Gtk-WARNING **: Error loading image 'file:///usr/share/themes/Ambiance/gtk-3.0/assets/button-toolbar-active-focused.png': Unable to load image-loading module: /usr/lib/x86_64-linux-gnu/gdk-pixbuf-2.0/2.10.0/loaders/libpixbufloader-png.so: /data/amax81t/packages/Krait/libz.so.1: version `ZLIB_1.2.9' not found (required by /usr/lib/x86_64-linux-gnu/libpng16.so.16)

(Krait:25246): GLib-GIO-WARNING **: unknown schema extension 'd'
double free or corruption (out)
Aborted (core dumped)

 Is there any required library or tools to be installed before? I'm looking forward to your reply. Thanks.

[lmdu]

I am sorry, there is no command version for krait. I am developing Krait2 which can process multiple genomes once time. I could not resolve the error above. I recommend you use windows version. It's more stable!

[Zjianglin]

Okay, thanks for your reply.

[XWBarton]

I am loving Krait but am just leaving a +1 for a command line version for Linux as my computing power is command line only and it takes a while to process large amounts of data locally.

[lmdu]

The command version is being developed. You can find it here stripy. I will release the first version in the next month.