From 8a2ecacedbaf2c18db34d94f2163689ff04cb6e1 Mon Sep 17 00:00:00 2001 From: "Anna (Anya) Parker" <50943381+anna-parker@users.noreply.github.com> Date: Fri, 4 Oct 2024 14:09:45 +0200 Subject: [PATCH] improve try catch --- ena-submission/scripts/create_assembly.py | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/ena-submission/scripts/create_assembly.py b/ena-submission/scripts/create_assembly.py index d6eb8f850..aadd71a96 100644 --- a/ena-submission/scripts/create_assembly.py +++ b/ena-submission/scripts/create_assembly.py @@ -345,16 +345,16 @@ def assembly_table_create( error_msg = f"Entry {row["accession"]} not found in project_table" raise RuntimeError(error_msg) - manifest_object = create_manifest_object( - config, - results_in_sample_table[0], - results_in_project_table[0], - sample_data_in_submission_table[0], - seq_key, - group_key, - test, - ) try: + manifest_object = create_manifest_object( + config, + results_in_sample_table[0], + results_in_project_table[0], + sample_data_in_submission_table[0], + seq_key, + group_key, + test, + ) manifest_file = create_manifest(manifest_object) except Exception as e: logger.error(f"Manifest creation failed for accession {row["accession"]} with error {e}")