forked from oborel/obo-relations
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathro-base.json
17307 lines (17307 loc) · 757 KB
/
ro-base.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
{
"graphs" : [ {
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/RO_0002170",
"meta" : {
"definition" : {
"val" : "a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)."
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern"
} ]
},
"type" : "PROPERTY",
"lbl" : "connected to"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002291",
"meta" : {
"definition" : {
"val" : "x is ubiquitously expressed in y if and only if x is expressed in y, and the majority of cells in y express x",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Revisit this term after coordinating with SO/SOM. The domain of this relation should be a sequence, as an instance of a DNA molecule is only expressed in the cell of which it is a part."
} ]
},
"type" : "PROPERTY",
"lbl" : "ubiquitously expressed in"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002292",
"meta" : {
"definition" : {
"val" : "Inverse of 'expressed in'",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "expresses"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002171",
"meta" : {
"definition" : {
"val" : "A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "non-overlapping with"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000425",
"val" : "Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "shares no parts with"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://purl.obolibrary.org/obo/RO_0002163"
} ]
},
"type" : "PROPERTY",
"lbl" : "mutually spatially disjoint with"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002176",
"meta" : {
"definition" : {
"val" : "c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "The M8 connects Glasgow and Edinburgh"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)."
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern"
} ]
},
"type" : "PROPERTY",
"lbl" : "connects"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002297",
"meta" : {
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GOC:mtg_berkeley_2013"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists."
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_formation_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in formation of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002298",
"meta" : {
"definition" : {
"val" : "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension" ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_morphogenesis_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GOC:mtg_berkeley_2013"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in morphogenesis of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002177",
"meta" : {
"definition" : {
"val" : "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000589",
"val" : "attached to part of (anatomical structure to anatomical structure)"
} ]
},
"type" : "PROPERTY",
"lbl" : "attached to part of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002299",
"meta" : {
"definition" : {
"val" : "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_maturation_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GOC:mtg_berkeley_2013"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in maturation of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002178",
"meta" : {
"definition" : {
"val" : "Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205"
} ]
},
"type" : "PROPERTY",
"lbl" : "supplies"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002179",
"meta" : {
"definition" : {
"val" : "Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205"
} ]
},
"type" : "PROPERTY",
"lbl" : "drains"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002172",
"meta" : {
"definition" : {
"val" : "An assertion that holds between an ontology class and an organism taxon class, which is intepreted to yield some relationship between instances of the ontology class and the taxon.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
} ]
},
"type" : "PROPERTY",
"lbl" : "taxonomic class assertion"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002293",
"meta" : {
"definition" : {
"val" : "inverse of ubiquiotously expressed in",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "ubiquitously expresses"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002173",
"meta" : {
"definition" : {
"val" : "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
} ]
},
"type" : "PROPERTY",
"lbl" : "ambiguous for taxon"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002295",
"meta" : {
"definition" : {
"val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://wiki.geneontology.org/index.php/Ontology_extensions"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint."
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_developmental_progression_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in developmental progression of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002174",
"meta" : {
"definition" : {
"val" : "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.",
"xrefs" : [ ]
},
"comments" : [ "This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-6601-2165"
} ]
},
"type" : "PROPERTY",
"lbl" : "dubious for taxon"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002175",
"meta" : {
"definition" : {
"val" : "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "https://orcid.org/0000-0002-6601-2165"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552"
} ]
},
"type" : "PROPERTY",
"lbl" : "present in taxon"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002296",
"meta" : {
"definition" : {
"val" : "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_gocam", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand",
"val" : "results_in_development_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "every flower development (GO:0009908) results in development of some flower (PO:0009046)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.geneontology.org/GO.doc.development.shtml"
} ]
},
"type" : "PROPERTY",
"lbl" : "results in development of"
}, {
"id" : "http://purl.obolibrary.org/obo/valid_for_gocam",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "pg"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://purl.obolibrary.org/obo/ro/docs/subsets/"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2020-09-22T11:05:45Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "valid_for_gocam"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002160",
"meta" : {
"definition" : {
"val" : "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "lactation SubClassOf 'only in taxon' some 'Mammalia'"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/17921072"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g.\n\n 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20973947"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "only in taxon"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002286",
"meta" : {
"definition" : {
"val" : "Inverse of developmentally preceded by",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally succeeded by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002287",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue"
} ]
},
"type" : "PROPERTY",
"lbl" : "part of developmental precursor of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002161",
"meta" : {
"definition" : {
"val" : "x never in taxon T if and only if T is a class, and x does not instantiate the class expression \"in taxon some T\". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20973947"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000425",
"val" : "?X DisjointWith RO_0002162 some ?Y "
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/17921072"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "tooth SubClassOf 'never in taxon' value 'Aves'"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "never in taxon"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002162",
"meta" : {
"definition" : {
"val" : "x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.",
"xrefs" : [ ]
},
"comments" : [ "Connects a biological entity to its taxon of origin." ],
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Jennifer Deegan"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/20973947"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/17921072"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Taxon-constraints"
} ]
},
"type" : "PROPERTY",
"lbl" : "in taxon"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002163",
"meta" : {
"definition" : {
"val" : "A is spatially_disjoint_from B if and only if they have no parts in common",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000424",
"val" : "BFO_0000051 exactly 0 (BFO_0000050 some ?Y)"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. "
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "spatially disjoint from"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002285",
"meta" : {
"definition" : {
"val" : "x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "replaces"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage"
} ]
},
"type" : "PROPERTY",
"lbl" : "developmentally replaces"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002158",
"meta" : {
"definition" : {
"val" : "two individual entities d1 and d2 stand in a shares_ancestor_with relation if and only if there exists some a such that d1 derived_by_descent_from a and d2 derived_by_descent_from a.",
"xrefs" : [ ]
},
"comments" : [ "VBO calls this homologous_to" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "Consider obsoleting and merging with child relation, 'in homology relationship with'"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "shares ancestor with"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002159",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "serially homologous to"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000092",
"meta" : {
"definition" : {
"val" : "inverse of has disposition",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ]
},
"type" : "PROPERTY",
"lbl" : "disposition of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000091",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence",
"xrefs" : [ ]
}
},
"type" : "PROPERTY",
"lbl" : "has disposition"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0003002",
"meta" : {
"definition" : {
"val" : "Holds between entity A (a transcription factor) and a nucleic acid B if and only if A down-regulates the expression of B. The nucleic acid can be a gene or an mRNA.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Vasundra Touré"
} ]
},
"type" : "PROPERTY",
"lbl" : "represses expression of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0003001",
"meta" : {
"definition" : {
"val" : "a produced_by b iff some process that occurs_in b has_output a.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Melissa Haendel"
} ]
},
"type" : "PROPERTY",
"lbl" : "produced by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002156",
"meta" : {
"definition" : {
"val" : "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "evolutionarily_descended_from"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "ancestral_stucture_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "derived by descent from"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0003003",
"meta" : {
"definition" : {
"val" : "Holds between entity A (a transcription factor) and nucleic acid B if and only if A up-regulates the expression of B. The nucleic acid can be a gene or mRNA.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Vasundra Touré"
} ]
},
"type" : "PROPERTY",
"lbl" : "increases expression of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002157",
"meta" : {
"definition" : {
"val" : "inverse of derived by descent from",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "has derived by descendant"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002150",
"meta" : {
"definition" : {
"val" : "X continuous_with Y if and only if X and Y share a fiat boundary.",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000232",
"val" : "The label for this relation was previously connected to. I relabeled this to \"continuous with\". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "David Osumi-Sutherland"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "connected to"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "FMA:85972"
} ]
},
"type" : "PROPERTY",
"lbl" : "continuous with"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002151",
"meta" : {
"definition" : {
"val" : "x partially overlaps y iff there exists some z such that z is part of x and z is part of y, and it is also the case that neither x is part of y or y is part of x",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000426",
"val" : "(forall (?x ?y) \n\t(iff \n\t\t(proper_overlaps ?x ?y)\n\t\t(and \n\t\t\t(overlaps ?x ?y)\n\t\t\t(not (part_of ?x ?y)) \n\t\t\t(not (part_of ?y ?x)))))"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "proper overlaps"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "We would like to include disjointness axioms with part_of and has_part, however this is not possible in OWL2 as these are non-simple properties and hence cannot appear in a disjointness axiom"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
} ]
},
"type" : "PROPERTY",
"lbl" : "partially overlaps"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0003000",
"meta" : {
"definition" : {
"val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.",
"xrefs" : [ ]
},
"comments" : [ "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." ],
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Melissa Haendel"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
} ]
},
"type" : "PROPERTY",
"lbl" : "produces"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002026",
"meta" : {
"definition" : {
"val" : "A relationship that holds between two images, A and B, where:\nA depicts X;\nB depicts Y;\nX and Y are both of type T'\nC is a 2 layer image consiting of layers A and B;\nA and B are aligned in C according to a shared co-ordinate framework so that common features of X and Y are co-incident with each other.\nNote: A and B may be 2D or 3D.\nExamples include: the relationship between two channels collected simultaneously from a confocal microscope; the relationship between an image dpeicting X and a painted annotation layer that delineates regions of X; the relationship between the tracing of a neuron on an EM stack and the co-ordinate space of the stack; the relationship between two separately collected images that have been brought into register via some image registration software.",
"xrefs" : [ "GOC:dos" ]
},
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-12-07T12:58:06Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "in register with"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002029",
"meta" : {
"definition" : {
"val" : "Then percentage of organisms in a population that die during some specified age range (age-specific mortality rate), minus the percentage that die in during the same age range in a wild-type population.",
"xrefs" : [ "PMID:24138933", "Wikipedia:Infant_mortality" ]
},
"comments" : [ "This could be used to record the increased infant morality rate in some population compared to wild-type. For examples of usage see http://purl.obolibrary.org/obo/FBcv_0000351 and subclasses." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2018-05-22T16:43:28Z"
} ]
},
"type" : "PROPERTY",
"lbl" : "has increased age-specific mortality rate"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002380",
"meta" : {
"definition" : {
"val" : "x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ],
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "FMA:85994"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000428"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "branching part of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000081",
"meta" : {
"definition" : {
"val" : "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this investigator role is a role of this person"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is role of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "role_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."
} ]
},
"type" : "PROPERTY",
"lbl" : "role of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000080",
"meta" : {
"definition" : {
"val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"comments" : [ "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "quality_of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A quality inheres in its bearer at all times for which the quality exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "is quality of"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this red color is a quality of this apple"
} ]
},
"type" : "PROPERTY",
"lbl" : "quality of"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0000085",
"meta" : {
"definition" : {
"val" : "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_function"
} ]
},
"type" : "PROPERTY",
"lbl" : "has function"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002264",
"meta" : {
"definition" : {
"val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.",
"xrefs" : [ ]
},
"subsets" : [ "http://purl.obolibrary.org/obo/valid_for_go_gp2term" ],
"synonyms" : [ {
"pred" : "hasRelatedSynonym",
"val" : "affects",
"xrefs" : [ ]
} ],
"basicPropertyValues" : [ {
"pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso",
"val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
"val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway."
} ]
},
"type" : "PROPERTY",
"lbl" : "acts upstream of or within"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002385",
"meta" : {
"definition" : {
"val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000428"
} ]
},
"type" : "PROPERTY",
"lbl" : "has potential to developmentally contribute to"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002022",
"meta" : {
"comments" : [ "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ],
"basicPropertyValues" : [ {
"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val" : "2017-09-17T13:52:24Z"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
"val" : "dos"
} ]
},
"type" : "PROPERTY",
"lbl" : "directly regulated by"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002386",
"meta" : {
"definition" : {
"val" : "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y",
"xrefs" : [ ]
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000428"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Chris Mungall"
} ]
},
"type" : "PROPERTY",
"lbl" : "has potential to developmentally induce"
}, {
"id" : "http://purl.obolibrary.org/obo/RO_0002023",
"meta" : {
"definition" : {
"val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.",
"xrefs" : [ "GOC:dos" ]
},
"basicPropertyValues" : [ {