forked from oborel/obo-relations
-
Notifications
You must be signed in to change notification settings - Fork 0
/
ro-base.owl
13220 lines (10115 loc) · 825 KB
/
ro-base.owl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ro/ro-base.owl#"
xml:base="http://purl.obolibrary.org/obo/ro/ro-base.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:cito="http://purl.org/spar/cito/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro/ro-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2021-10-27/ro-base.owl"/>
<dc:description xml:lang="en">The OBO Relations Ontology (RO) is a collection of OWL relations (ObjectProperties) intended for use across a wide variety of biological ontologies.</dc:description>
<dc:title xml:lang="en">OBO Relations Ontology</dc:title>
<terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/bfo-axioms.owl>) VersionIRI(<null>))) [Axioms: 18 Logical Axioms: 7]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/bfo-classes-minimal.owl>) VersionIRI(<null>))) [Axioms: 49 Logical Axioms: 12]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/chemical.owl>) VersionIRI(<null>))) [Axioms: 9 Logical Axioms: 3]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/core.owl>) VersionIRI(<null>))) [Axioms: 311 Logical Axioms: 69]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/el-constraints.owl>) VersionIRI(<null>))) [Axioms: 6 Logical Axioms: 2]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/generated-axioms.owl>) VersionIRI(<null>))) [Axioms: 18 Logical Axioms: 9]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/rohom.owl>) VersionIRI(<null>))) [Axioms: 731 Logical Axioms: 148]</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/temporal-intervals.owl>) VersionIRI(<null>))) [Axioms: 146 Logical Axioms: 45]</rdfs:comment>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI"> https://github.com/oborel/obo-relations/</foaf:homepage>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000424 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000424"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000425 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000425"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000426 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000426">
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a string or literal, where the value of the string or literal is a Common Logic sentence of collection of sentences that define the Object Property.</obo:IAO_0000115>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000589 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000589"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600"/>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.</obo:IAO_0000115>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002161 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002161">
<obo:IAO_0000112>tooth SubClassOf 'never in taxon' value 'Aves'</obo:IAO_0000112>
<obo:IAO_0000115>x never in taxon T if and only if T is a class, and x does not instantiate the class expression "in taxon some T". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/17921072"/>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/20973947"/>
<obo:IAO_0000425>?X DisjointWith RO_0002162 some ?Y </obo:IAO_0000425>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">never in taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002171 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002171">
<obo:IAO_0000115>A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B.</obo:IAO_0000115>
<obo:IAO_0000118>non-overlapping with</obo:IAO_0000118>
<obo:IAO_0000118>shares no parts with</obo:IAO_0000118>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
<obo:IAO_0000425>Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (BFO_0000050 some ?Y)</obo:IAO_0000425>
<rdfs:label xml:lang="en">mutually spatially disjoint with</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/RO_0002163"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002172 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002172">
<obo:IAO_0000115>An assertion that holds between an ontology class and an organism taxon class, which is intepreted to yield some relationship between instances of the ontology class and the taxon.</obo:IAO_0000115>
<rdfs:label xml:lang="en">taxonomic class assertion</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002173 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002173">
<obo:IAO_0000115>S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]</obo:IAO_0000115>
<rdfs:label xml:lang="en">ambiguous for taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002174 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002174">
<obo:IAO_0000115>S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T.</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0002-6601-2165</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
<rdfs:comment>This relation lacks a strong logical interpretation, but can be used in place of never_in_taxon where it is desirable to state that the definition of the class is too strict for the taxon under consideration, but placing a never_in_taxon link would result in a chain of inconsistencies that will take ongoing coordinated effort to resolve. Example: metencephalon in teleost</rdfs:comment>
<rdfs:label xml:lang="en">dubious for taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002175 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002175">
<obo:IAO_0000115>S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S</obo:IAO_0000115>
<obo:IAO_0000117>https://orcid.org/0000-0002-6601-2165</obo:IAO_0000117>
<obo:IAO_0000119 rdf:resource="http://www.ncbi.nlm.nih.gov/pubmed/22293552"/>
<rdfs:label xml:lang="en">present in taxon</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/obophenotype/uberon/wiki/Taxon-constraints"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002172"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002259 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002259">
<rdfs:label>defined by inverse</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002416 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002416">
<obo:IAO_0000115>An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL.</obo:IAO_0000115>
<rdfs:label xml:lang="en">logical macro assertion</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/ro/docs/shortcut-relations/</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002419 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002419">
<obo:IAO_0000115>An assertion that holds between an OWL Annotation Property P and a non-negative integer N, with the interpretation: for any P(i j) it must be the case that | { k : P(i k) } | = N.</obo:IAO_0000115>
<rdfs:label xml:lang="en">annotation property cardinality</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002423"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002420 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002420">
<obo:IAO_0000115>A logical macro assertion whose domain is an IRI for a class</obo:IAO_0000115>
<obo:IAO_0000116>The domain for this class can be considered to be owl:Class, but we cannot assert this in OWL2-DL</obo:IAO_0000116>
<rdfs:label xml:lang="en">logical macro assertion on a class</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002421 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002421">
<obo:IAO_0000115>A logical macro assertion whose domain is an IRI for a property</obo:IAO_0000115>
<rdfs:label xml:lang="en">logical macro assertion on a property</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002422 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002422">
<obo:IAO_0000115>Used to annotate object properties to describe a logical meta-property or characteristic of the object property.</obo:IAO_0000115>
<rdfs:label xml:lang="en">logical macro assertion on an object property</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002421"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002423 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002423">
<rdfs:label xml:lang="en">logical macro assertion on an annotation property</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002421"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002474 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002474">
<obo:IAO_0000115>An assertion that holds between an OWL Object Property and a dispositional interpretation that elucidates how OWL Class Axioms or OWL Individuals that use this property are to be interpreted in a dispositional context. For example, A binds B may be interpreted as A have a mutual disposition that is realized by binding to the other one.</obo:IAO_0000115>
<rdfs:label>dispositional interpretation</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002475 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002475">
<obo:IAO_0000112>'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'</obo:IAO_0000112>
<obo:IAO_0000115>A is has_no_connections_with B if there are no parts of A or B that have a connection with the other.</obo:IAO_0000115>
<obo:IAO_0000118>shares no connection with</obo:IAO_0000118>
<obo:IAO_0000425>Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: (BFO_0000050 some ?X) and (RO_0002170 some (BFO_0000050 some ?Y))</obo:IAO_0000425>
<rdfs:label>has no connections with</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002483 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002483">
<rdfs:label>inherited annotation property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002484 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002484">
<obo:IAO_0000115>Connects an ontology entity (class, property, etc) to a URL from which curator guidance can be obtained. This assertion is inherited in the same manner as functional annotations (e.g. for GO, over SubClassOf and part_of)</obo:IAO_0000115>
<rdfs:label>curator guidance link</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002483"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002504 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002504">
<obo:IAO_0000112>brain always_present_in_taxon 'Vertebrata'</obo:IAO_0000112>
<obo:IAO_0000112>forelimb always_present_in_taxon Euarchontoglires</obo:IAO_0000112>
<obo:IAO_0000115>S always_present_in_taxon T if every fully formed member of taxon T has part some S, or is an instance of S</obo:IAO_0000115>
<obo:IAO_0000116>This is a very strong relation. Often we will not have enough evidence to know for sure that there are no species within a lineage that lack the structure - loss is common in evolution. However, there are some statements we can make with confidence - no vertebrate lineage could persist without a brain or a heart. All primates are limbed. </obo:IAO_0000116>
<obo:IAO_0000118>never lost in</obo:IAO_0000118>
<rdfs:label>always present in taxon</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002175"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002535 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002535">
<obo:IAO_0000232>This properties were created originally for the annotation of developmental or life cycle stages, such as for example Carnegie Stage 20 in humans. </obo:IAO_0000232>
<rdfs:label>temporal logical macro assertion on a class</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002420"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002536 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002536">
<rdfs:label>measurement property has unit</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002423"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002537 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002537">
<rdfs:label>has start time value</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002538 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002538">
<rdfs:label>has end time value</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002539 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002539">
<obo:IAO_0000115>Count of number of days intervening between the start of the stage and the time of fertilization according to a reference model. Note that the first day of development has the value of 0 for this property.</obo:IAO_0000115>
<rdfs:label>start, days post fertilization</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002540 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002540">
<obo:IAO_0000115>Count of number of days intervening between the end of the stage and the time of fertilization according to a reference model. Note that the first day of development has the value of 1 for this property.</obo:IAO_0000115>
<rdfs:label>end, days post fertilization</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002541 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002541">
<obo:IAO_0000115>Count of number of years intervening between the start of the stage and the time of birth according to a reference model. Note that the first year of post-birth development has the value of 0 for this property, and the period during which the child is one year old has the value 1.</obo:IAO_0000115>
<rdfs:label>start, years post birth</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002542 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002542">
<obo:IAO_0000115>Count of number of years intervening between the end of the stage and the time of birth according to a reference model. Note that the first year of post-birth development has the value of 1 for this property, and the period during which the child is one year old has the value 2</obo:IAO_0000115>
<rdfs:label>end, years post birth</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002543 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002543">
<obo:IAO_0000115>Count of number of months intervening between the start of the stage and the time of birth according to a reference model. Note that the first month of post-birth development has the value of 0 for this property, and the period during which the child is one month old has the value 1.</obo:IAO_0000115>
<rdfs:label>start, months post birth</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002544 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002544">
<obo:IAO_0000115>Count of number of months intervening between the end of the stage and the time of birth according to a reference model. Note that the first month of post-birth development has the value of 1 for this property, and the period during which the child is one month old has the value 2</obo:IAO_0000115>
<rdfs:label>end, months post birth</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002545 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002545">
<obo:IAO_0000115>Defines the start and end of a stage with a duration of 1 month, relative to either the time of fertilization or last menstrual period of the mother (to be clarified), counting from one, in terms of a reference model. Thus if month_of_gestation=3, then the stage is 2 month in.</obo:IAO_0000115>
<rdfs:label>month of gestation</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002546 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002546">
<obo:IAO_0000115>A relationship between a stage class and an anatomical structure or developmental process class, in which the stage is characterized by the appearance of the structure or the occurrence of the biological process</obo:IAO_0000115>
<rdfs:label>has developmental stage marker</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002535"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002547 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002547">
<obo:IAO_0000115>Count of number of days intervening between the start of the stage and the time of coitum.</obo:IAO_0000115>
<obo:IAO_0000232>For mouse staging: assuming that it takes place around midnight during a 7pm to 5am dark cycle (noon of the day on which the vaginal plug is found, the embryos are aged 0.5 days post coitum)</obo:IAO_0000232>
<rdfs:label>start, days post coitum</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002548 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002548">
<obo:IAO_0000115>Count of number of days intervening between the end of the stage and the time of coitum.</obo:IAO_0000115>
<rdfs:label>end, days post coitum</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002549 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002549">
<rdfs:label>start, weeks post birth</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002537"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002550 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002550">
<rdfs:label>end, weeks post birth</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/temporal-durations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002538"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002560 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002560">
<obo:IAO_0000115>If Rel is the relational form of a process Pr, then it follow that: Rel(x,y) <-> exists p : Pr(p), x subject-partner-in p, y object-partner-in p</obo:IAO_0000115>
<rdfs:label>is asymmetric relational form of process class</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/ro/docs/interaction-relations/</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002562"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002561 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002561">
<obo:IAO_0000115>If Rel is the relational form of a process Pr, then it follow that: Rel(x,y) <-> exists p : Pr(p), x partner-in p, y partner-in p</obo:IAO_0000115>
<rdfs:label>is symmetric relational form of process class</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/ro/docs/interaction-relations/</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002562"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002562 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002562">
<obo:IAO_0000115>R is the relational form of a process if and only if either (1) R is the symmetric relational form of a process or (2) R is the asymmetric relational form of a process</obo:IAO_0000115>
<rdfs:label>is relational form of process class</rdfs:label>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/ro/docs/interaction-relations/</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002594"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002575 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002575">
<obo:IAO_0000115>relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y</obo:IAO_0000115>
<obo:IAO_0000116>The general property hierarchy is:
"directly P" SubPropertyOf "P"
Transitive(P)
Where we have an annotation assertion
"directly P" "is direct form of" "P"</obo:IAO_0000116>
<obo:RO_0002423>If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'</obo:RO_0002423>
<terms:creator>Chris Mungall</terms:creator>
<rdfs:label>is direct form of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/direct-and-indirect-relations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002579 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002579">
<obo:IAO_0000115>relation p is the indirect form of relation q iff p is a subPropertyOf q, and there exists some p' such that p' is the direct form of q, p' o p' -> p, and forall x,y : x q y -> either (1) x p y or (2) x p' y</obo:IAO_0000115>
<terms:creator>Chris Mungall</terms:creator>
<rdfs:label>is indirect form of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/direct-and-indirect-relations/"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002580 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002580">
<rdfs:label>logical macro assertion on an axiom</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002581 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002581">
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL</obo:IAO_0000115>
<rdfs:label>is a defining property chain axiom</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002580"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002582 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002582">
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.</obo:IAO_0000115>
<rdfs:label>is a defining property chain axiom where second argument is reflexive</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002581"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002594 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002594">
<obo:IAO_0000115>An annotation property that connects an object property to a class, where the object property is derived from or a shortcut property for the class. The exact semantics of this annotation may vary on a case by case basis.</obo:IAO_0000115>
<rdfs:label>is relational form of a class</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002601 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002601">
<obo:IAO_0000115>A shortcut relationship that holds between two entities based on their identity criteria</obo:IAO_0000115>
<rdfs:label>logical macro assertion involving identity</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002416"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002602 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002602">
<obo:IAO_0000115>A shortcut relationship between two entities x and y1, such that the intent is that the relationship is functional and inverse function, but there is no guarantee that this property holds.</obo:IAO_0000115>
<rdfs:label>in approximate one to one relationship with</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002601"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002603 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002603">
<obo:IAO_0000115>x is approximately equivalent to y if it is the case that x is equivalent, identical or near-equivalent to y</obo:IAO_0000115>
<obo:IAO_0000232>The precise meaning of this property is dependent upon some contexts. It is intended to group multiple possible formalisms. Possibilities include a probabilistic interpretation, for example, Pr(x=y) > 0.95. Other possibilities include reified statements of belief, for example, "Database D states that x=y"</obo:IAO_0000232>
<rdfs:label>is approximately equivalent to</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002602"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002604 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002604">
<obo:IAO_0000112>'anterior end of organism' is-opposite-of 'posterior end of organism'</obo:IAO_0000112>
<obo:IAO_0000112>'increase in temperature' is-opposite-of 'decrease in temperature'</obo:IAO_0000112>
<obo:IAO_0000115>x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).</obo:IAO_0000115>
<rdfs:label>is opposite of</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002602"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002605 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002605">
<obo:IAO_0000115>x is indistinguishable from y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).</obo:IAO_0000115>
<rdfs:label>is indistinguishable from</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002603"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002611 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002611">
<rdfs:label>evidential logical macro assertion on an axiom</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002580"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002612 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002612">
<obo:IAO_0000115>A relationship between a sentence and an instance of a piece of evidence in which the evidence supports the axiom</obo:IAO_0000115>
<obo:IAO_0000232>This annotation property is intended to be used in an OWL Axiom Annotation to connect an OWL Axiom to an instance of an ECO (evidence type ontology class). Because in OWL, all axiom annotations must use an Annotation Property, the value of the annotation cannot be an OWL individual, the convention is to use an IRI of the individual.</obo:IAO_0000232>
<rdfs:label>axiom has evidence</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002611"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002613 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002613">
<obo:IAO_0000115>A relationship between a sentence and an instance of a piece of evidence in which the evidence contradicts the axiom</obo:IAO_0000115>
<obo:IAO_0000232>This annotation property is intended to be used in an OWL Axiom Annotation to connect an OWL Axiom to an instance of an ECO (evidence type ontology class). Because in OWL, all axiom annotations must use an Annotation Property, the value of the annotation cannot be an OWL individual, the convention is to use an IRI of the individual.</obo:IAO_0000232>
<rdfs:label>axiom contradicted by evidence</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002611"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002617 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002617">
<obo:IAO_0000112>In the context of a particular project, the IRI with CURIE NCBIGene:64327 (which in this example denotes a class) is considered to be representative. This means that if we have equivalent classes with IRIs OMIM:605522, ENSEMBL:ENSG00000105983, HGNC:13243 forming an equivalence set, the NCBIGene is considered the representative member IRI. Depending on the policies of the project, the classes may be merged, or the NCBIGene IRI may be chosen as the default in a user interface context.</obo:IAO_0000112>
<obo:IAO_0000115>this property relates an IRI to the xsd boolean value "True" if the IRI is intended to be the representative IRI for a collection of classes that are mutually equivalent.</obo:IAO_0000115>
<obo:IAO_0000232>If it is necessary to make the context explicit, an axiom annotation can be added to the annotation assertion</obo:IAO_0000232>
<rdfs:label>is representative IRI for equivalence set</rdfs:label>
<rdfs:seeAlso>OWLAPI Reasoner documentation for representativeElement, which follows a similar idea, but selects an arbitrary member</rdfs:seeAlso>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002601"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004048 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004048">
<obo:IAO_0000115>Used to annotate object properties representing a causal relationship where the value indicates a direction. Should be "+", "-" or "0"</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-03-13T23:59:29Z</oboInOwl:creation_date>
<rdfs:label>is directional form of</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004049 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004049">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-03-14T00:03:16Z</oboInOwl:creation_date>
<rdfs:label>is positive form of</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0004048"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004050 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004050">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-03-14T00:03:24Z</oboInOwl:creation_date>
<rdfs:label>is negative form of</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0004048"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0040042 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0040042">
<obo:IAO_0000112>part-of is homeomorphic for independent continuants.</obo:IAO_0000112>
<obo:IAO_0000115>R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cjm</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2018-10-21T19:46:34Z</oboInOwl:creation_date>
<rdfs:comment>R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C.</rdfs:comment>
<rdfs:label>is homeomorphic for</rdfs:label>
<rdfs:seeAlso rdf:resource="https://github.com/oborel/obo-relations/issues/164"/>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002422"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pg</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2020-09-22T11:05:29Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">valid_for_go_annotation_extension</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/subsets/"/>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_gp2term -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_gp2term">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pg</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2020-09-22T11:05:18Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">valid_for_go_gp2term</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/subsets/"/>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_ontology -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_ontology">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pg</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2020-09-22T11:04:12Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">valid_for_go_ontology</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/subsets/"/>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_gocam -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_gocam">
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pg</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2020-09-22T11:05:45Z</oboInOwl:creation_date>
<rdfs:label xml:lang="en">valid_for_gocam</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/subsets/"/>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ro/subsets#ro-eco -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ro/subsets#ro-eco">
<rdfs:label>eco subset</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/ro/docs/subsets/"/>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/elements/1.1/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/license"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source"/>
<!-- http://purl.org/dc/terms/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
<!-- http://purl.org/dc/terms/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
<!-- http://purl.org/spar/cito/citesAsAuthority -->
<owl:AnnotationProperty rdf:about="http://purl.org/spar/cito/citesAsAuthority"/>
<!-- http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled -->
<owl:AnnotationProperty rdf:about="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled"/>
<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">subset_property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#editor_note -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#editor_note"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_broad_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_narrow_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_obo_format_version</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">has_related_synonym</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset">
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">in_subset</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->