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MultiAssayExperiment 0.101.42

New features

  • metadata<- set method now available for the MultiAssayExperiment

Bug fixes and minor improvements

  • metadata argument available in the MultiAssayExperiment constructor function
  • Fix bug when subsetting for unmatched samples/colnames (drop = FALSE) in constructor

MultiAssayExperiment 0.101.40

New features

  • Improved MultiAssayExperiment constructor with renamed argument "experiments" for the ExperimentList or list input.

MultiAssayExperiment 0.101.39

New features

  • updateObject method now available for old instances of the MultiAssayExperiment
  • Users with invalid MultiAssayExperiments should update and re-serialize them

Bug fixes and minor improvements

  • drop argument now works as intended when using List inherited objects

MultiAssayExperiment 0.101.38

New features

  • complete.cases method available for the MultiAssayExperiment class

MultiAssayExperiment 0.101.37

New features

  • sampleMap column names renamed to assay (prev. "assayname"), primary, and colname (prev. "assay")
  • New vignete available for creating MultiAssayExperiment objects with TCGA data

Bug fixes and minor improvements

  • Added informative error to MultiAssayExperiment constructor
  • Improved show method display
  • Removed warning message when only ExperimentList argument provided

MultiAssayExperiment 0.101.36

  • Elist class renamed to ExperimentList
  • ExperimentList constructor is homonymous
  • ExperimentList accessor now called experiments
  • ExperimentList replacement method is now experiments<-
  • Updated vignettes to reflect change of names

MultiAssayExperiment 0.101.34

  • assay method for RangedRaggedAssay works on inner metadata columns now
  • vignette examples available for HDF5Array package
  • Improved outline for main vignette

MultiAssayExperiment 0.99.202

New Features

  • assay method available for RangedRaggedAssay and other classes. Created to obtain raw data from certain classes (see ?assay,(class),ANY-method).

MultiAssayExperiment 0.99.194

New Features

  • Subsetting by non-character i (#108)
  • PrepMultiAssay helper function now available to aid in creating object (#122)
  • Vignette now building (#125)
  • Preliminary assay method for RangedRaggedAssay

Bug fixes and minor improvements

  • superflous subset function removed
  • sampleMap uses character vectors instead of Rle
  • Elist order consistent when subsetting
  • mapToList preserves list order

MultiAssayExperiment 0.99.14

  • NEWS file is now live!
  • Package now in Bioc-devel!
  • More to come!

New Features

  • Replacement method for colnames now available for the RangedRaggedAssay class.

Bug fixes and minor improvements

  • Documentation additions