From 01f63a5429843c5ba4f0f8d1c951c839e421720f Mon Sep 17 00:00:00 2001
From: Eli Rykoff <erykoff@stanford.edu>
Date: Thu, 14 Jul 2022 11:34:12 -0700
Subject: [PATCH 1/2] Add scripts to convert to gen3 repo.

---
 README.md                   |  4 ++++
 scripts/convert_repo.sh     | 15 +++++++++++++++
 scripts/decertify_calibs.py | 10 ++++++++++
 scripts/export_gen3.py      | 36 ++++++++++++++++++++++++++++++++++++
 4 files changed, 65 insertions(+)
 create mode 100755 scripts/convert_repo.sh
 create mode 100755 scripts/decertify_calibs.py
 create mode 100755 scripts/export_gen3.py

diff --git a/README.md b/README.md
index c9ef973..85e3b9e 100644
--- a/README.md
+++ b/README.md
@@ -30,6 +30,10 @@ These were constructed using `cp_pipe`'s `constructBias.py` and `constructFlat.p
 Both files are for CCD 47, but have had all of the image data set to 0 to reduce file size.
 They are used to test parsing of calibration products as part of the gen2 calibration ingestion process.
 
+Gen3 Conversion
+---------------
+With weekly w_2022_28 + DM-34862 obs_decam, run `./scripts/convert_repo.sh` followed by `./scripts/export_gen3.py`
+
 Git LFS
 -------
 
diff --git a/scripts/convert_repo.sh b/scripts/convert_repo.sh
new file mode 100755
index 0000000..381870d
--- /dev/null
+++ b/scripts/convert_repo.sh
@@ -0,0 +1,15 @@
+#!/bin/env bash
+
+# Script to do the conversion from gen2 to gen3.
+# Requires w_2022_28 + DM-34862 of obs_decam (or later weekly after merge).
+
+butler convert repo --gen2root "./rawData" --calibs "./cpCalib" -t relsymlink
+
+# Need to re-certify calibs because default is incorrect.
+python $TESTDATA_DECAM_DIR/scripts/decertify_calibs.py
+
+butler certify-calibrations --begin-date 1990-01-01 --end-date 2030-01-01 repo/ DECam/calib/20130901T000000Z DECam/calib cpBias
+butler certify-calibrations --begin-date 1990-01-01 --end-date 2030-01-01 repo/ DECam/calib/20130901T000000Z DECam/calib cpFlat
+butler certify-calibrations --begin-date 1990-01-01 --end-date 2030-01-01 repo/ DECam/calib/20131115T000000Z DECam/calib fringe
+
+# butler define-visits repo lsst.obs.decam.DarkEnergyCamera
diff --git a/scripts/decertify_calibs.py b/scripts/decertify_calibs.py
new file mode 100755
index 0000000..308ff73
--- /dev/null
+++ b/scripts/decertify_calibs.py
@@ -0,0 +1,10 @@
+#!/bin/env python
+
+import lsst.daf.butler as dafButler
+
+
+butler = dafButler.Butler('repo', instrument='DECam', writeable=True)
+
+butler.registry.decertify('DECam/calib', 'cpBias', dafButler.Timespan(None, None))
+butler.registry.decertify('DECam/calib', 'cpFlat', dafButler.Timespan(None, None))
+butler.registry.decertify('DECam/calib', 'fringe', dafButler.Timespan(None, None))
diff --git a/scripts/export_gen3.py b/scripts/export_gen3.py
new file mode 100755
index 0000000..0716500
--- /dev/null
+++ b/scripts/export_gen3.py
@@ -0,0 +1,36 @@
+#!/usr/bin/env python
+# Create a gen3 exports.yaml file from an existing gen3 decam repo.
+
+import lsst.daf.butler as dafButler
+import os.path
+
+
+butler = dafButler.Butler(os.path.expandvars('$TESTDATA_DECAM_DIR/repo/butler.yaml'), instrument="DECam")
+
+
+with butler.export(filename="repo/exports.yaml") as export:
+    # Raw data
+    export.saveDatasets(butler.registry.queryDatasets(collections="DECam/raw/all",
+                                                      datasetType="raw"))
+    # Calibrations
+    for calib in ['camera', 'cpBias', 'cpFlat', 'fringe', 'defects', 'crosstalk', 'linearizer']:
+        export.saveDatasets(butler.registry.queryDatasets(calib, collections=...))
+
+    # export.saveDatasets(butler.registry.queryDatasets('camera', collections=...))
+    # export.saveDatasets(butler.registry.queryDatasets('cpBias', collections=...))
+    # export.saveDatasets(butler.registry.queryDatasets('cpFlat', collections=...))
+    # export.saveDatasets(butler.registry.queryDatasets('fringe', collections=...))
+    # export.saveDatasets(butler.registry.queryDatasets('defects', collections=...))
+    # export.saveDatasets(butler.registry.queryDatasets('crosstalk', collections=...))
+    # export.saveDatasets(butler.registry.queryDatasets('linearizer', collections=...))
+
+    # Collections
+    export.saveCollection('DECam/raw/all')
+    export.saveCollection('DECam/calib')
+    export.saveCollection('skymaps')
+
+    # Dimension data
+    for name in butler.registry.dimensions.getStaticElements():
+        if str(name).startswith('visit'):
+            records = butler.registry.queryDimensionRecords(visit_dim)
+            export.saveDimensionData(visit_dim, records)

From 7ba162c624a07046f28e7f32c23b72173e5c2d34 Mon Sep 17 00:00:00 2001
From: Eli Rykoff <erykoff@stanford.edu>
Date: Thu, 14 Jul 2022 11:34:54 -0700
Subject: [PATCH 2/2] Add gen3 repo.

---
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+  - timespan: !lsst.daf.butler.Timespan
+      begin: !butler_time/tai/iso '2013-09-16 09:26:35.000000000'
+      end: !butler_time/tai/iso '2014-01-17 01:29:35.000000000'
+    dataset_ids:
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+    - !uuid '01a333a5-f8ef-45cf-97b4-7fee3683317d'
+  - timespan: !lsst.daf.butler.Timespan
+      begin: null
+      end: null
+    dataset_ids:
+    - !uuid 'fdf4ae94-803a-493f-9955-8e96fd3d52a6'
diff --git a/repo/gen3.sqlite3 b/repo/gen3.sqlite3
new file mode 100644
index 0000000..710b050
--- /dev/null
+++ b/repo/gen3.sqlite3
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5415923871f0e6cbf4d9fae89f658b3b1f27f1d66b3c9e50928113637b85fccb
+size 1794048