publish-to-test-pypi.yml

name: Upload to PyPI and TestPyPI
on:
  release:
    types: [published]
jobs:
  build-and-publish:
    name: Build the Mikado release and publish to TestPyPI
    runs-on: ubuntu-20.04
    steps:
      - uses: actions/checkout@master
      - name: Set up Python 3.8
        uses: actions/setup-python@v1
        with:
          python-version: 3.8
      - uses: actions/checkout@v2
      - name: Cache conda
        id: cache-miniconda
        uses: actions/cache@v1
        env:
          CACHE_NUMBER: 0
        with:
          repo-token: ${{ secrets.GITHUB_TOKEN }}
          path: ~/conda_pkgs_dir
          key:
            ${{ runner.os }}-conda-${{ hashFiles('./environment.yml') }}
#      - name: Install system development tools
#        run: |
#          export DEBIAN_FRONTEND=noninteractive
#          sudo apt update
#          sudo apt install -y build-essential zlib1g-dev zlib1g
      - uses: conda-incubator/setup-miniconda@v2
        with:
          python-version: ${{ matrix.python-version }}
          repo-token: ${{ secrets.GITHUB_TOKEN }}
          miniconda-version: "latest"
          environment-file: ./environment.yml
          mamba-version: "*"
          use-mamba: true
          channels: bioconda, conda-forge, defaults
          use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
          auto-update-conda: true
          activate-environment: "test"
          auto-activate-base: false
      - name: Install dependencies
        run: |
          gcc --help
          pip install -r requirements.txt
          pip install Cython
      - name: Install Mikado
        run: >-
          python -m pip install build --user
      - name: Build sdist
        run: >-
          python -m build --sdist --outdir dist/
      - name: Publish to TestPyPI
        uses: pypa/gh-action-pypi-publish@master
        with:
          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
          repository_url: https://test.pypi.org/legacy/
      - name: Publish to PyPI
        uses: pypa/gh-action-pypi-publish@master
        with:
          password: ${{ secrets.PYPI_API_TOKEN }}
          repository_url: https://upload.pypi.org/legacy/