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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<title>pub.bib</title>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<meta name="generator" content="bibtex2html">
</head>
<body>
<h1>pub.bib</h1><a name="macklin2017dina"></a><pre>
@article{<a href="pub.html#macklin2017dina">macklin2017dina</a>,
title = {DINA: Open Source and Open Services-A Modern Approach for Sustainable Natural History Collection Management Systems},
author = {Macklin, James and Gl{\"o}ckler, Falko and Hoffmann, Jana and Ronquist, Fredrik and Daume, Stefan and Haston, Elspeth},
journal = {Biodiversity Information Science and Standards},
year = {2017},
publisher = {Pensoft Publishers}
}
</pre>
<a name="hovmoller2017streckkodning"></a><pre>
@article{<a href="pub.html#hovmoller2017streckkodning">hovmoller2017streckkodning</a>,
title = {Streckkodning av den svenska floran och faunan--f{\"o}ruts{\"a}ttningar och utmaningar},
author = {Hovm{\"o}ller, Rasmus and Forshage, Mattias and Ronquist, Fredrik},
journal = {PM fr{\aa}n Naturhistoriska riksmuseet 2017: 1. Naturhistoriska riksmuseets sm{\aa}skriftserie},
year = {2017}
}
</pre>
<a name="marquina2019new"></a><pre>
@article{<a href="pub.html#marquina2019new">marquina2019new</a>,
title = {New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods},
author = {Marquina, Daniel and Andersson, Anders F and Ronquist, Fredrik},
journal = {Molecular ecology resources},
volume = {19},
number = {1},
pages = {90--104},
year = {2019}
}
</pre>
<a name="macklin2018general"></a><pre>
@article{<a href="pub.html#macklin2018general">macklin2018general</a>,
title = {General introduction to DINA},
author = {Macklin, James and Englund, Markus and Gl{\"o}ckler, Falko and Heikkinen, Mikko and Hoffmann, Jana and Newton, Keith and Ronquist, Fredrick},
journal = {Biodiversity Information Science and Standards},
year = {2018},
publisher = {Pensoft Publishers}
}
</pre>
<a name="ronquist2018life"></a><pre>
@article{<a href="pub.html#ronquist2018life">ronquist2018life</a>,
title = {Life history of Parnips and the evolutionary origin of gall wasps},
author = {Ronquist, Fredrik and Nylander, Johan and V{\aa}rdal, Hege and Nieves-Aldrey, Jos{\'e} Luis},
journal = {Journal of Hymenoptera Research},
volume = {65},
pages = {91--110},
year = {2018}
}
</pre>
<a name="marquina2017insect"></a><pre>
@article{<a href="pub.html#marquina2017insect">marquina2017insect</a>,
title = {Insect multilocus metabarcoding: in silico evaluation of old and new primers},
author = {Marquina, Daniel and Andersson, Anders F and Ronquist, Fredrik},
journal = {Genome},
volume = {60},
number = {11},
pages = {971--972},
year = {2017},
publisher = {NRC Research Press}
}
</pre>
<a name="braga2018evolution"></a><pre>
@article{<a href="pub.html#braga2018evolution">braga2018evolution</a>,
title = {Evolution of butterfly-plant networks revealed by Bayesian inference of host repertoire},
author = {Braga, Mariana P and Landis, Michael and Nylin, S{\"o}ren and Janz, Niklas and Ronquist, Fredrik},
year = {2018}
}
</pre>
<a name="braga2018bayesian"></a><pre>
@article{<a href="pub.html#braga2018bayesian">braga2018bayesian</a>,
title = {Bayesian analysis of host repertoire evolution},
author = {Braga, Mariana P and Landis, Michael and Nylin, S{\"o}ren and Janz, Niklas and Ronquist, Fredrik},
year = {2018}
}
</pre>
<a name="lunden2018automatic"></a><pre>
@article{<a href="pub.html#lunden2018automatic">lunden2018automatic</a>,
title = {Automatic Alignment of Sequential Monte Carlo Inference in Higher-Order Probabilistic Programs},
author = {Lund{\'e}n, Daniel and Broman, David and Ronquist, Fredrik and Murray, Lawrence M},
journal = {arXiv preprint arXiv:1812.07439},
year = {2018}
}
</pre>
<a name="valan2019automated"></a><pre>
@article{<a href="pub.html#valan2019automated">valan2019automated</a>,
title = {Automated taxonomic identification of insects with expert-level accuracy using effective feature transfer from convolutional networks},
author = {Valan, Miroslav and Makonyi, Karoly and Maki, Atsuto and Vondr{\'a}{\v{c}}ek, Dominik and Ronquist, Fredrik},
journal = {Systematic biology},
volume = {68},
number = {6},
pages = {876--895},
year = {2019},
publisher = {Oxford University Press}
}
</pre>
<a name="braga2020bayesian"></a><pre>
@article{<a href="pub.html#braga2020bayesian">braga2020bayesian</a>,
title = {Bayesian inference of ancestral host-parasite interactions under a phylogenetic model of host repertoire evolution},
author = {Braga, Mariana P and Landis, Michael J and Nylin, S{\"o}ren and Janz, Niklas and Ronquist, Fredrik},
journal = {Systematic Biology},
year = {2020}
}
</pre>
<a name="ronquist2020completing"></a><pre>
@article{<a href="pub.html#ronquist2020completing">ronquist2020completing</a>,
title = {Completing Linnaeus's inventory of the Swedish insect fauna: only 5,000 species left?},
author = {Ronquist, Fredrik and Forshage, Mattias and H{\"a}ggqvist, Sibylle and Karlsson, Dave and Hovm{\"o}ller, Rasmus and Bergsten, Johannes and Holston, Kevin and Britton, Tom and Abenius, Johan and Andersson, Bengt and others},
journal = {Plos one},
volume = {15},
number = {3},
pages = {e0228561},
year = {2020},
publisher = {Public Library of Science San Francisco, CA USA}
}
</pre>
<a name="glockler2019dina"></a><pre>
@article{<a href="pub.html#glockler2019dina">glockler2019dina</a>,
title = {DINA: Open Source and Open Services-A modern approach for natural history collection management systems and research},
author = {Gl{\"o}ckler, Falko and Macklin, James and Ronquist, Fredrik and Hoffmann, Jana},
journal = {Biodiversity Information Science and Standards},
year = {2019},
publisher = {Pensoft Publishers}
}
</pre>
<a name="kudlicka2020probabilistic"></a><pre>
@inproceedings{<a href="pub.html#kudlicka2020probabilistic">kudlicka2020probabilistic</a>,
title = {Probabilistic programming for birth-death models of evolution using an alive particle filter with delayed sampling},
author = {Kudlicka, Jan and Murray, Lawrence M and Ronquist, Fredrik and Sch{\"o}n, Thomas B},
booktitle = {Uncertainty in Artificial Intelligence},
pages = {679--689},
year = {2020},
organization = {PMLR}
}
</pre>
<a name="marquina2019establishing"></a><pre>
@article{<a href="pub.html#marquina2019establishing">marquina2019establishing</a>,
title = {Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches},
author = {Marquina, Daniel and Esparza-Salas, Rodrigo and Roslin, Tomas and Ronquist, Fredrik},
journal = {Molecular ecology resources},
volume = {19},
number = {6},
pages = {1516--1530},
year = {2019}
}
</pre>
<a name="zhang2020using"></a><pre>
@article{<a href="pub.html#zhang2020using">zhang2020using</a>,
title = {Using parsimony-guided tree proposals to accelerate convergence in Bayesian phylogenetic inference},
author = {Zhang, Chi and Huelsenbeck, John P and Ronquist, Fredrik},
journal = {Systematic Biology},
year = {2020}
}
</pre>
<a name="karlsson2020swedish"></a><pre>
@article{<a href="pub.html#karlsson2020swedish">karlsson2020swedish</a>,
title = {The Swedish Malaise trap project: a 15 year retrospective on a countrywide insect inventory},
author = {Karlsson, Dave and Hartop, Emily and Forshage, Mattias and Jaschhof, Mathias and Ronquist, Fredrik},
journal = {Biodiversity Data Journal},
volume = {8},
year = {2020},
publisher = {Pensoft Publishers}
}
</pre>
<a name="marquina2020effect"></a><pre>
@article{<a href="pub.html#marquina2020effect">marquina2020effect</a>,
title = {The effect of ethanol concentration on the preservation of insects for biodiversity studies},
author = {Marquina, Daniel and Ronquist, Fredrik and Lukasik, Piotr},
journal = {bioRxiv},
year = {2020},
publisher = {Cold Spring Harbor Laboratory}
}
</pre>
<a name="marquina2020evaluation"></a><pre>
@article{<a href="pub.html#marquina2020evaluation">marquina2020evaluation</a>,
title = {Evaluation of non-destructive extraction protocols for metabarcoding of insects},
author = {Marquina, Daniel and Roslin, Tomas and {\L}ukasik, Piotr and Ronquist, Fredrik},
year = {2020}
}
</pre>
<a name="ronquist2020probabilistic"></a><pre>
@article{<a href="pub.html#ronquist2020probabilistic">ronquist2020probabilistic</a>,
title = {Probabilistic programming: a powerful new approach to statistical phylogenetics},
author = {Ronquist, Fredrik and Kudlicka, Jan and Senderov, Viktor and Borgstr{\"o}m, Johannes and Lartillot, Nicolas and Lund{\'e}n, Daniel and Murray, Lawrence and Sch{\"o}n, Thomas B and Broman, David},
journal = {BioRxiv},
year = {2020},
publisher = {Cold Spring Harbor Laboratory}
}
</pre>
<a name="hartop2020scuttling"></a><pre>
@article{<a href="pub.html#hartop2020scuttling">hartop2020scuttling</a>,
title = {Scuttling towards monophyly: phylogeny of the mega-diverse genus Megaselia (Diptera: Phoridae)},
author = {Hartop, Emily and H{\"a}ggqvist, Sibylle and Ulefors, Sven Olof and Ronquist, Fredrik},
journal = {Systematic Entomology},
year = {2020},
publisher = {Blackwell Publishing Ltd Oxford, UK}
}
</pre>
<a name="gobbo2020inquilines"></a><pre>
@article{<a href="pub.html#gobbo2020inquilines">gobbo2020inquilines</a>,
title = {From Inquilines to Gall Inducers: Genomic Signature of a Life-style Transition in Synergus Gall Wasps},
author = {Gobbo, Erik and Lartillot, Nicolas and Hearn, Jack and Stone, Graham N and Abe, Yoshihisa and Wheat, Christopher W and Ide, Tatsuya and Ronquist, Fredirik},
journal = {Genome biology and evolution},
year = {2020},
publisher = {Oxford University Press}
}
</pre>
<hr><p><em>This file was generated by
<a href="http://www.lri.fr/~filliatr/bibtex2html/">bibtex2html</a> 1.99.</em></p>
</body>
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