Confusion related to PBT_SFT_consensus.bed and Analysis_1_consensus.bed in the compareSamples module of SuperEnhancer_pipeline

[biobug16]

Hi @mWekking , jxshi and swvanderlaan
I am trying to use your SuperEnhancer_pipeline for my samples. I have a question related to compareSamples module where we need to make compareSamples.txt and that should contain file details like: PBT1.bam,PBT_SFT_consensus.bed,A_PBT for each sample.

But here I am not sure about PBT_SFT_consensus.bed, what does it has? I hope this is not the consensus file generated by peakConsensusbecause that is Analysis_1_consensus.bed in the command given below:

python superEnhancerPipeline.py compareSamples compareSamples.txt consensusFiles/Analysis_1_consensus.bed.

Looking for any of your reply soon.
Thanks