core dump at final step

[rwhetten]

I'm encountering an error using Quickmerge installed from Bioconda in September of this year, in the stderr output:

# COMPLETETIME
# SPACE
4: FINISHING DATA
Abort (core dumped)

The anchor_summary, param_summary, and aln_summary files are all produced and contain data, but the merged.fasta output file is empty. The stdout file contains the line

Exited with exit code 134

The job was not limited by allocated RAM or run time, so it seems to be an internal problem. Any suggestions on how to solve this?

[benyoung93]

also running into this problem so interested to see fixes.

[mahulchak]

does it happen if you change the -l or -ml parametera?

[benyoung93]

so mine was fixed changing the -l and -ml parameters yes. I also gave the supercomputer an ungodly amount of memory to run the quickmerge which I know isnt the best fix but sometimes it works.

Happy to provide more information if needed.