We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hi ,
I am wondering where in the output the depth of coverage is written??
Thanks
The text was updated successfully, but these errors were encountered:
This is from the README.
The fasta file will be annotated like the following in the female_only mode:
record_id length_of_contig proportion_shared_with_female
And in female+male mode:
record_id length_of_contig proportion_shared_with_female median_k-mer_abundance
"median_k-mer_abundance" seems to be the coverage you are interested in. You can collect the headers from annotated fasta file using this
awk '/^>/ {print substr($0,2)}' $fasta_file > fasta_headers.tab
You can open fasta_headers.tab in excel and allow spaces and tab to separate data into cells and collect column 4.
Sorry, something went wrong.
No branches or pull requests
Hi ,
I am wondering where in the output the depth of coverage is written??
Thanks
The text was updated successfully, but these errors were encountered: