diff --git a/README.md b/README.md index d5aa21a62..2e4f4763f 100644 --- a/README.md +++ b/README.md @@ -72,18 +72,31 @@ $ poetry publish ## Release notes +### 0.7.0 + +* Rename parameter "populations" to "cohorts" to be consistent with + sgkit terminology. + + ### 0.6.0 * Add `Ag3.gene_cnv()` and `Ag3.gene_cnv_frequencies()`. -* Improvements and maintenance to `Ag3.snp_effects()` and `Ag3.snp_allele_frequencies()`. + +* Improvements and maintenance to `Ag3.snp_effects()` and + `Ag3.snp_allele_frequencies()`. ### 0.5.0 * Add `Ag3.snp_allele_frequencies()`. + * Add `Ag3.snp_effects()`. -* Add `Ag3.cnv_hmm()`, `Ag3.cnv_coverage_calls()` and `Ag3.cnv_discordant_read_calls()`. + +* Add `Ag3.cnv_hmm()`, `Ag3.cnv_coverage_calls()` and + `Ag3.cnv_discordant_read_calls()`. + * Speed up test suite via caching. + * Add configuration for pre-commit hooks. @@ -100,16 +113,24 @@ $ poetry publish ### 0.4.1 -* Explore workarounds to xarray memory issues in the `Ag3.snp_calls()` method. +* Explore workarounds to xarray memory issues in the `Ag3.snp_calls()` + method. ### 0.4.0 -* Make public the `Ag3.open_genome()`, `Ag3.open_snp_sites()`, `Ag3.open_site_filters()` and `Ag3.open_snp_genotypes()` methods. +* Make public the `Ag3.open_genome()`, `Ag3.open_snp_sites()`, + `Ag3.open_site_filters()` and `Ag3.open_snp_genotypes()` methods. + * Add the `Ag3.cross_metadata()` method. -* Add `Ag3.site_annotations()` and `Ag3.open_site_annotations()` methods. + +* Add `Ag3.site_annotations()` and `Ag3.open_site_annotations()` + methods. + * Add the `Ag3.snp_calls()` method. + * Improve unit tests. + * Improve memory usage. @@ -120,4 +141,5 @@ $ poetry publish ### 0.3.0 -First release with basic functionality in the `Ag3` class for accessing Ag1000G phase 3 data. +First release with basic functionality in the `Ag3` class for +accessing Ag1000G phase 3 data. diff --git a/pyproject.toml b/pyproject.toml index f5e8c1395..8f0276984 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "malariagen_data" -version = "0.6.0" +version = "0.7.0" description = "A package for accessing MalariaGEN public data." authors = ["Alistair Miles ", "Chris Clarkson "] license = "MIT"