diff --git a/README.md b/README.md index 9aa22c906..6f3df87d3 100644 --- a/README.md +++ b/README.md @@ -29,6 +29,34 @@ from the following locations: ## Release notes +### 3.0.0 + +* Added a new function `Ag3.plot_cnv_hmm_coverage()` which generates a + bokeh plot showing normalised coverage and HMM copy number for an + individual sample. + +* Added a new function `Ag3.plot_cnv_hmm_heatmap()` which generates a + bokeh plot showing the HMM copy number for multiple samples as a + heatmap. + +* Added support for accessing genome regions to the CNV data access + functions `Ag3.cnv_hmm()`, `Ag3.gene_cnv()`, + `Ag3.gene_cnv_frequencies()` and `Ag3.cnv_coverage_calls()` + ([GH113](https://github.com/malariagen/malariagen-data-python/issues/113)). Please + use the `region` parameter to specify a contig or contig region. The + previous `contig` parameter is no longer supported. + +* Added support for a `region` parameter to the `Ag3.geneset()` + function. + +* Added docstrings for `Ag3.plot_genes()` and `Ag3.plot_transcript()` + ([GH170](https://github.com/malariagen/malariagen-data-python/issues/170)). + +* Set plot width and height automatically in + `Ag3.plot_frequencies_heatmap()` based on the number of rows and + columns. + + ### 2.2.0 diff --git a/pyproject.toml b/pyproject.toml index ea72ee3e8..9c17359f2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "malariagen_data" -version = "2.2.0" +version = "3.0.0" description = "A package for accessing MalariaGEN public data." authors = ["Alistair Miles ", "Chris Clarkson ", "Kathryn Murie ", "Nace Kranjc ", "Kelly Bennett "] license = "MIT"