diff --git a/environment-pinned-macos-latest.yml b/environment-pinned-macos-latest.yml index efead7b..2c4acf8 100644 --- a/environment-pinned-macos-latest.yml +++ b/environment-pinned-macos-latest.yml @@ -1,714 +1,719 @@ -name: binder-6cbd385 +name: mgenv-5b0ff24 channels: - conda-forge - bioconda - - defaults - conda-forge/label/broken dependencies: - - accessible-pygments=0.0.4=pyhd8ed1ab_0 + - accessible-pygments=0.0.5=pyhd8ed1ab_0 + - adal=1.2.7=pyhd8ed1ab_0 + - adlfs=2024.7.0=pyhd8ed1ab_0 - affine=2.4.0=pyhd8ed1ab_0 - - aiobotocore=2.13.0=pyhd8ed1ab_0 - - aioeasywebdav=2.4.0=pyha770c72_0 - - aiofiles=22.1.0=pyhd8ed1ab_0 - - aiohttp=3.9.5=py310hb372a2b_0 - - aioitertools=0.11.0=pyhd8ed1ab_0 + - aiobotocore=2.15.2=pyhd8ed1ab_0 + - aiohappyeyeballs=2.4.3=pyhd8ed1ab_0 + - aiohttp=3.11.6=py312h3520af0_0 + - aioitertools=0.12.0=pyhd8ed1ab_0 - aiosignal=1.3.1=pyhd8ed1ab_0 - - aiosqlite=0.20.0=pyhd8ed1ab_0 - alabaster=0.7.16=pyhd8ed1ab_0 - - almosthere=2.0.2=h05e3726_1 - - altair=5.3.0=pyhd8ed1ab_0 + - altair=5.4.1=pyhd8ed1ab_2 - amply=0.1.6=pyhd8ed1ab_0 - - anyio=3.7.1=pyhd8ed1ab_0 - - aom=3.9.0=h9bc2f43_0 + - annotated-types=0.7.0=pyhd8ed1ab_0 + - anyio=4.6.2.post1=pyhd8ed1ab_0 + - aom=3.9.1=hf036a51_0 - appdirs=1.4.4=pyh9f0ad1d_0 - appnope=0.1.4=pyhd8ed1ab_0 - apricot-select=0.6.1=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - - argon2-cffi-bindings=21.2.0=py310h6729b98_4 + - argon2-cffi-bindings=21.2.0=py312hb553811_5 + - argparse-dataclass=2.0.0=pyhd8ed1ab_0 - arrow=1.3.0=pyhd8ed1ab_0 - asciitree=0.3.3=py_2 - - asteval=0.9.33=pyhd8ed1ab_0 + - asteval=1.0.5=pyhd8ed1ab_0 - asttokens=2.4.1=pyhd8ed1ab_0 - - async-timeout=4.0.3=pyhd8ed1ab_0 - atk-1.0=2.38.0=h4bec284_2 - - attmap=0.13.2=pyhd8ed1ab_0 - - attrs=23.2.0=pyh71513ae_0 - - aws-c-auth=0.7.22=h26aba2d_2 - - aws-c-cal=0.6.14=hb0e519c_1 - - aws-c-common=0.9.19=hfdf4475_0 - - aws-c-compression=0.2.18=hb0e519c_6 - - aws-c-event-stream=0.4.2=hc5e814a_12 - - aws-c-http=0.8.1=ha6e9f73_17 - - aws-c-io=0.14.8=hf69683f_5 - - aws-c-mqtt=0.10.4=h76e2169_4 - - aws-c-s3=0.5.9=hd10324c_3 - - aws-c-sdkutils=0.1.16=hb0e519c_2 - - aws-checksums=0.1.18=hb0e519c_6 - - aws-crt-cpp=0.26.9=h473fab1_0 - - aws-sdk-cpp=1.11.329=h6b2b1af_3 - - azure-core-cpp=1.11.1=hbb1e571_1 - - azure-identity-cpp=1.6.0=h9a80fee_1 - - azure-storage-blobs-cpp=12.10.0=h7728843_1 - - azure-storage-common-cpp=12.5.0=h0e82ce4_4 - - babel=2.14.0=pyhd8ed1ab_0 - - bcftools=1.20=h79774e1_0 - - bcrypt=4.1.3=py310h12a1ced_0 + - attrs=24.2.0=pyh71513ae_0 + - aws-c-auth=0.8.0=hb1b2711_10 + - aws-c-cal=0.8.0=h1c3498a_2 + - aws-c-common=0.10.3=h6e16a3a_0 + - aws-c-compression=0.3.0=h1c3498a_2 + - aws-c-event-stream=0.5.0=heedde58_7 + - aws-c-http=0.9.1=h0c96e2d_2 + - aws-c-io=0.15.2=h789f5c1_2 + - aws-c-mqtt=0.11.0=h00ab244_8 + - aws-c-s3=0.7.1=h704940e_3 + - aws-c-sdkutils=0.2.1=h1c3498a_1 + - aws-checksums=0.2.2=h1c3498a_1 + - aws-crt-cpp=0.29.4=h44c5c52_1 + - aws-sdk-cpp=1.11.449=h7bf9075_2 + - azure-core=1.32.0=pyhff2d567_0 + - azure-core-cpp=1.14.0=h9a36307_0 + - azure-datalake-store=0.0.51=pyh9f0ad1d_0 + - azure-identity=1.17.1=pyhd8ed1ab_0 + - azure-identity-cpp=1.10.0=ha4e2ba9_0 + - azure-storage-blob=12.24.0=pyhff2d567_0 + - azure-storage-blobs-cpp=12.13.0=h3d2f5f1_1 + - azure-storage-common-cpp=12.8.0=h1ccc5ac_1 + - azure-storage-files-datalake-cpp=12.12.0=h86941f0_1 + - babel=2.16.0=pyhd8ed1ab_0 + - backoff=2.2.1=pyhd8ed1ab_0 + - bcftools=1.21=h0126a07_0 + - bcrypt=4.2.1=py312h0d0de52_0 - beautifulsoup4=4.12.3=pyha770c72_0 - - bed-reader=1.0.0=py310hdd6081d_0 - - bgen=4.1.3=ha41cdc6_0 - - biopython=1.83=py310hb372a2b_0 - - black=24.4.2=py310h2ec42d9_0 - - blas=2.122=openblas - - blas-devel=3.9.0=22_osx64_openblas - - bleach=6.1.0=pyhd8ed1ab_0 - - blinker=1.8.2=pyhd8ed1ab_0 - - blosc=1.21.5=hafa3907_1 - - bokeh=3.4.1=pyhd8ed1ab_0 - - boto3=1.34.106=pyhd8ed1ab_0 - - botocore=1.34.106=pyge310_1234567_0 + - biopython=1.84=py312hbd25219_0 + - black=24.10.0=py312hb401068_0 + - blas=2.125=openblas + - blas-devel=3.9.0=25_osx64_openblas + - bleach=6.2.0=pyhd8ed1ab_0 + - blinker=1.9.0=pyhff2d567_0 + - blosc=1.21.6=h7d75f6d_0 + - bokeh=3.5.2=pyhd8ed1ab_0 + - boto3=1.35.36=pyhd8ed1ab_0 + - botocore=1.35.36=pyge310_1234567_0 - bqplot=0.12.43=pyhd8ed1ab_0 - branca=0.7.2=pyhd8ed1ab_0 - - brotli=1.1.0=h0dc2134_1 - - brotli-bin=1.1.0=h0dc2134_1 - - brotli-python=1.1.0=py310h9e9d8ca_1 + - brotli=1.1.0=h00291cd_2 + - brotli-bin=1.1.0=h00291cd_2 + - brotli-python=1.1.0=py312h5861a67_2 - brunsli=0.1=h046ec9c_0 - - bzip2=1.0.8=h10d778d_5 - - c-ares=1.28.1=h10d778d_0 - - c-blosc2=2.14.4=h0ae8482_1 - - ca-certificates=2024.6.2=h8857fd0_0 + - bzip2=1.0.8=hfdf4475_7 + - c-ares=1.34.3=hf13058a_0 + - c-blosc2=2.15.1=hb9356d3_0 + - ca-certificates=2024.8.30=h8857fd0_0 - cached-property=1.5.2=hd8ed1ab_1 - cached_property=1.5.2=pyha770c72_1 - - cachetools=5.3.3=pyhd8ed1ab_0 - - cairo=1.18.0=h99e66fa_0 - - cartopy=0.23.0=py310hbf2a7f0_1 - - cbgen=1.0.1=py310h1961e1f_2 - - cctools_osx-64=986=h58a35ae_0 - - certifi=2024.2.2=pyhd8ed1ab_0 - - cffi=1.16.0=py310hdca579f_0 - - cfitsio=4.4.0=h60fb419_1 - - cftime=1.6.3=py310hde789be_1 + - cachetools=5.5.0=pyhd8ed1ab_0 + - cairo=1.18.0=h37bd5c4_3 + - cartopy=0.24.0=py312h98e817e_0 + - cctools_osx-64=1010.6=hd0ff2cf_1 + - certifi=2024.8.30=pyhd8ed1ab_0 + - cffi=1.17.1=py312hf857d28_0 + - cftime=1.6.4=py312h3a11e2b_1 - charls=2.4.2=he965462_0 - - charset-normalizer=3.3.2=pyhd8ed1ab_0 - - clang=18.1.6=default_ha3b9224_0 - - clang-18=18.1.6=default_ha3b9224_0 - - clang_impl_osx-64=18.1.6=h2ef7af4_15 - - clang_osx-64=18.1.6=hb91bd55_15 - - clangxx=18.1.6=default_ha3b9224_0 - - clangxx_impl_osx-64=18.1.6=hfd204e2_15 - - clangxx_osx-64=18.1.6=hb91bd55_15 + - charset-normalizer=3.4.0=pyhd8ed1ab_0 + - clang=19.1.4=default_heb2e8d1_0 + - clang-19=19.1.4=default_h3571c67_0 + - clang_impl_osx-64=19.1.4=h885feb7_23 + - clang_osx-64=19.1.4=h7e5c614_23 + - clangxx=19.1.4=default_heb2e8d1_0 + - clangxx_impl_osx-64=19.1.4=h1c96b81_23 + - clangxx_osx-64=19.1.4=h7e5c614_23 - click=8.1.7=unix_pyh707e725_0 - click-plugins=1.1.1=py_0 - cligj=0.7.2=pyhd8ed1ab_1 - - cloudpickle=3.0.0=pyhd8ed1ab_0 - - coin-or-cbc=2.10.11=h6ddf826_0 - - coin-or-cgl=0.60.7=ha3c4b8c_0 - - coin-or-clp=1.17.8=hf0ee74e_0 - - coin-or-osi=0.108.10=h13a241d_0 - - coin-or-utils=2.11.11=h86ddba1_0 - - coincbc=2.10.11=0_metapackage + - cloudpickle=3.1.0=pyhd8ed1ab_1 + - coiled=1.63.0=pyhd8ed1ab_0 + - coin-or-cbc=2.10.12=h26cd4a2_1 + - coin-or-cgl=0.60.9=h5c63661_0 + - coin-or-clp=1.17.10=hf05e7e8_0 + - coin-or-osi=0.108.11=h8c189bd_1 + - coin-or-utils=2.11.12=h95c8798_1 + - coincbc=2.10.12=1_metapackage - colorama=0.4.6=pyhd8ed1ab_0 - colorcet=3.1.0=pyhd8ed1ab_0 + - coloredlogs=15.0.1=pyhd8ed1ab_3 - comm=0.2.2=pyhd8ed1ab_0 - - compiler-rt=18.1.6=h734a56e_0 - - compiler-rt_osx-64=18.1.6=h7312ed1_0 + - compiler-rt=19.1.4=h52031e2_0 + - compiler-rt_osx-64=19.1.4=hb3d56c2_0 + - conda-inject=1.3.2=pyhd8ed1ab_0 - configargparse=1.7=pyhd8ed1ab_0 - connection_pool=0.0.3=pyhd3deb0d_0 - - contourpy=1.2.1=py310hb3b189b_0 - - coverage=7.5.3=py310h936d840_0 - - cramjam=2.8.3=py310hd8ae0ce_0 - - cryptography=42.0.8=py310h8d695f1_0 + - contourpy=1.3.1=py312hc47a885_0 + - coverage=7.6.7=py312h3520af0_0 + - cpython=3.12.7=py312hd8ed1ab_0 + - cramjam=2.8.4rc3=py312h45123d6_2 + - cryptography=43.0.3=py312h83535b2_0 - cycler=0.12.1=pyhd8ed1ab_0 - - cython=3.0.10=py310h5daac23_0 - - cytoolz=0.12.3=py310hb372a2b_0 - - dash=2.17.0=pyhd8ed1ab_0 - - dask=2024.5.2=pyhd8ed1ab_0 - - dask-core=2024.5.2=pyhd8ed1ab_0 - - dask-expr=1.1.2=pyhd8ed1ab_0 + - cython=3.0.11=py312h6891801_3 + - cytoolz=1.0.0=py312hb553811_1 + - dash=2.18.1=pyhd8ed1ab_0 + - dask=2024.11.2=pyhff2d567_1 + - dask-core=2024.11.2=pyhff2d567_1 + - dask-expr=1.1.19=pyhd8ed1ab_0 - dask-gateway=2022.10.0=pyh8af1aa0_0 - dask-glm=0.3.2=pyhd8ed1ab_0 - - dask-ml=2024.3.20=pyhd8ed1ab_0 - - dataclasses=0.8=pyhc8e2a94_3 - - datashader=0.16.2=pyhd8ed1ab_0 - - datrie=0.8.2=py310h6729b98_7 + - dask-ml=2024.4.4=pyhd8ed1ab_0 + - datashader=0.16.3=pyhd8ed1ab_0 + - datrie=0.8.2=py312hb553811_8 - dav1d=1.2.1=h0dc2134_0 - - debugpy=1.8.1=py310h5daac23_0 + - debugpy=1.8.8=py312haafddd8_0 - decorator=5.1.1=pyhd8ed1ab_0 - defusedxml=0.7.1=pyhd8ed1ab_0 - demes=0.2.3=pyhd8ed1ab_0 - - distributed=2024.5.2=pyhd8ed1ab_0 - - docutils=0.20.1=py310h2ec42d9_3 - - dpath=2.1.6=pyha770c72_0 - - dropbox=12.0.2=pyhd8ed1ab_0 - - eido=0.2.2=pyhd8ed1ab_0 + - deprecated=1.2.15=pyhff2d567_0 + - dill=0.3.9=pyhd8ed1ab_0 + - distributed=2024.11.2=pyhff2d567_1 + - docutils=0.20.1=py312hb401068_3 + - dpath=2.2.0=pyha770c72_0 + - eido=0.2.4=pyhd8ed1ab_0 - entrypoints=0.4=pyhd8ed1ab_0 - - et_xmlfile=1.1.0=pyhd8ed1ab_0 - - exceptiongroup=1.2.0=pyhd8ed1ab_2 - - executing=2.0.1=pyhd8ed1ab_0 - - expat=2.6.2=h73e2aa4_0 - - fastcluster=1.2.6=py310h5262a37_3 + - et_xmlfile=2.0.0=pyhd8ed1ab_0 + - exceptiongroup=1.2.2=pyhd8ed1ab_0 + - executing=2.1.0=pyhd8ed1ab_0 + - fabric=3.2.2=pyhd8ed1ab_0 + - fastcluster=1.2.6=py312h81f2e74_4 - fasteners=0.17.3=pyhd8ed1ab_0 - - fastparquet=2024.5.0=py310hde789be_0 - - filechunkio=1.8=py_2 - - filelock=3.14.0=pyhd8ed1ab_0 - - fiona=1.9.6=py310h8d9e4d4_3 - - flake8=7.0.0=pyhd8ed1ab_0 - - flask=3.0.3=pyhd8ed1ab_0 - - fmt=10.2.1=h7728843_0 - - folium=0.16.0=pyhd8ed1ab_0 + - fastparquet=2024.11.0=py312h025c719_0 + - filelock=3.16.1=pyhd8ed1ab_0 + - flake8=7.1.1=pyhd8ed1ab_0 + - folium=0.18.0=pyhd8ed1ab_0 - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 - font-ttf-inconsolata=3.000=h77eed37_0 - font-ttf-source-code-pro=2.038=h77eed37_0 - - font-ttf-ubuntu=0.83=h77eed37_2 - - fontconfig=2.14.2=h5bb23bf_0 + - font-ttf-ubuntu=0.83=h77eed37_3 + - fontconfig=2.15.0=h37eeddb_1 - fonts-conda-ecosystem=1=0 - fonts-conda-forge=1=0 - - fonttools=4.53.0=py310h936d840_0 + - fonttools=4.55.0=py312h3520af0_0 - fqdn=1.5.1=pyhd8ed1ab_0 - freetype=2.12.1=h60636b9_2 - freexl=2.0.0=h3ec172f_0 - fribidi=1.0.10=hbcb3906_0 - - frozenlist=1.4.1=py310hb372a2b_0 - - fsspec=2024.6.0=pyhff2d567_0 - - ftputil=5.1.0=pyhd8ed1ab_0 + - frozenlist=1.5.0=py312h3d0f464_0 + - fsspec=2024.10.0=pyhff2d567_0 - fusepy=3.0.1=py_0 - future=1.0.0=pyhd8ed1ab_0 - gast=0.4.0=pyh9f0ad1d_0 - - gcsfs=2024.6.0=pyhd8ed1ab_0 - - gdal=3.9.0=py310h0a4269c_5 + - gcsfs=2024.10.0=pyhd8ed1ab_0 + - gdal=3.9.2=py312h365dfcf_7 - gdk-pixbuf=2.42.12=ha587570_0 - - geopandas=0.14.4=pyhd8ed1ab_0 - - geopandas-base=0.14.4=pyha770c72_0 - - geos=3.12.1=h93d8f39_0 - - geotiff=1.7.3=h58516b7_0 - - geoviews=1.12.0=pyhd8ed1ab_0 - - geoviews-core=1.12.0=pyha770c72_0 - - gettext=0.22.5=h5ff76d1_2 - - gettext-tools=0.22.5=h5ff76d1_2 - - gflags=2.2.2=hb1e8313_1004 + - geopandas=1.0.1=pyhd8ed1ab_1 + - geopandas-base=1.0.1=pyha770c72_1 + - geos=3.13.0=hac325c4_0 + - geotiff=1.7.3=h2b6e260_3 + - geoviews=1.13.0=hd8ed1ab_0 + - geoviews-core=1.13.0=pyha770c72_0 + - gettext=0.22.5=hdfe23c8_3 + - gettext-tools=0.22.5=hdfe23c8_3 + - gflags=2.2.2=hac325c4_1005 - gfortran_impl_osx-64=13.2.0=h2bc304d_3 - gfortran_osx-64=13.2.0=h18f7dce_1 - giflib=5.2.2=h10d778d_0 + - gilknocker=0.4.1=py312h669792a_4 - gitdb=4.0.11=pyhd8ed1ab_0 - gitpython=3.1.43=pyhd8ed1ab_0 - - glog=0.7.0=h31b1b29_0 - - gmp=6.3.0=h73e2aa4_1 - - gmpy2=2.1.5=py310h0310db1_1 - - google-api-core=2.19.0=pyhd8ed1ab_0 - - google-api-python-client=2.132.0=pyhd8ed1ab_0 - - google-auth=2.30.0=pyhff2d567_0 - - google-auth-httplib2=0.2.0=pyhd8ed1ab_0 - - google-auth-oauthlib=1.2.0=pyhd8ed1ab_0 + - glog=0.7.1=h2790a97_0 + - gmp=6.3.0=hf036a51_2 + - gmpy2=2.1.5=py312h165121d_2 + - google-api-core=2.22.0=pyhd8ed1ab_0 + - google-auth=2.36.0=pyhff2d567_0 + - google-auth-oauthlib=1.2.1=pyhd8ed1ab_0 - google-cloud-core=2.4.1=pyhd8ed1ab_0 - - google-cloud-sdk=479.0.0=py310h2ec42d9_0 - - google-cloud-storage=2.16.0=pyhca7485f_0 - - google-crc32c=1.1.2=py310h15bd425_5 - - google-resumable-media=2.7.0=pyhd8ed1ab_0 - - googleapis-common-protos=1.63.1=pyhd8ed1ab_0 + - google-cloud-sdk=502.0.0=py312hb401068_0 + - google-cloud-storage=2.18.2=pyhff2d567_0 + - google-crc32c=1.1.2=py312hfee8fbb_6 + - google-resumable-media=2.7.2=pyhd8ed1ab_1 + - googleapis-common-protos=1.66.0=pyhff2d567_0 - graphite2=1.3.13=h73e2aa4_1003 - - graphviz=11.0.0=hc9017ca_0 - - greenlet=3.0.3=py310h5daac23_0 - - grpcio=1.62.2=py310h271164d_0 + - graphviz=12.0.0=he14ced1_0 + - greenlet=3.1.1=py312h5861a67_0 + - grpcio=1.67.1=py312h0705dd3_0 - gsl=2.7=h93259b0_0 - - gtk2=2.24.33=h8ca4665_4 + - gtk2=2.24.33=h2c15c3c_5 - gts=0.7.6=h53e17e3_4 - h11=0.14.0=pyhd8ed1ab_0 - - h5py=3.11.0=nompi_py310habadce9_102 - - harfbuzz=8.5.0=h053f038_0 + - h2=4.1.0=pyhd8ed1ab_0 + - h5py=3.12.1=nompi_py312hf7df0ef_102 + - harfbuzz=9.0.0=h098a298_1 - hdf4=4.2.15=h8138101_7 - hdf5=1.14.3=nompi_h687a608_105 - - hmmlearn=0.3.2=py310he0a0c5d_0 - - holoviews=1.18.3=pyhd8ed1ab_0 - - htslib=1.20=hec81eee_1 - - httplib2=0.22.0=pyhd8ed1ab_0 - - humanfriendly=10.0=pyhd8ed1ab_6 - - humanize=4.9.0=pyhd8ed1ab_0 - - hvplot=0.10.0=pyhd8ed1ab_0 - - icu=73.2=hf5e326d_0 - - idna=3.7=pyhd8ed1ab_0 - - imagecodecs=2024.6.1=py310h1c55b14_0 - - imageio=2.34.1=pyh4b66e23_0 + - hmmlearn=0.3.3=py312haafddd8_0 + - holoviews=1.20.0=pyhd8ed1ab_0 + - hpack=4.0.0=pyh9f0ad1d_0 + - htslib=1.21=hec81eee_0 + - httpcore=1.0.7=pyh29332c3_1 + - httpx=0.27.2=pyhd8ed1ab_0 + - humanfriendly=10.0=pyhd81877a_7 + - humanize=4.11.0=pyhd8ed1ab_0 + - hvplot=0.11.1=pyhd8ed1ab_0 + - hyperframe=6.0.1=pyhd8ed1ab_0 + - icu=75.1=h120a0e1_0 + - idna=3.10=pyhd8ed1ab_0 + - imagecodecs=2024.6.1=py312h2bbe148_4 + - imageio=2.36.0=pyh12aca89_1 - imagesize=1.4.1=pyhd8ed1ab_0 - - importlib-metadata=4.13.0=pyha770c72_0 - - importlib_metadata=4.13.0=hd8ed1ab_0 - - importlib_resources=6.4.0=pyhd8ed1ab_0 + - immutables=0.21=py312hb553811_0 + - importlib-metadata=7.2.1=pyha770c72_0 + - importlib_resources=6.4.5=pyhd8ed1ab_0 - importnb=2023.11.1=pyhd8ed1ab_0 - iniconfig=2.0.0=pyhd8ed1ab_0 - - intake=2.0.5=pyhd8ed1ab_0 + - intake=2.0.7=pyhd8ed1ab_0 - intake-xarray=0.7.0=pyhd8ed1ab_0 - intervaltree=3.1.0=pyhd8ed1ab_1 + - invoke=2.2.0=pyhd8ed1ab_0 - ipydatagrid=1.3.2=pyhd8ed1ab_0 - ipyigv=0.1.9=pyhe74cb21_0 - - ipykernel=6.29.4=pyh57ce528_0 - - ipyleaflet=0.19.1=pyhd8ed1ab_0 + - ipykernel=6.29.5=pyh57ce528_0 + - ipyleaflet=0.19.2=pyhd8ed1ab_0 - ipympl=0.9.4=pyhd8ed1ab_0 - - ipython=8.25.0=pyh707e725_0 + - ipython=8.29.0=pyh707e725_0 - ipython_genutils=0.2.0=pyhd8ed1ab_1 - ipytree=0.2.2=pyhd8ed1ab_0 - ipywidgets=7.6.5=pyhd8ed1ab_0 - isl=0.26=imath32_h2e86a7b_101 - iso3166=2.1.1=pyhd8ed1ab_0 + - isodate=0.7.2=pyhd8ed1ab_0 - isoduration=20.11.0=pyhd8ed1ab_0 - isort=5.13.2=pyhd8ed1ab_0 - itsdangerous=2.2.0=pyhd8ed1ab_0 - - jedi=0.19.1=pyhd8ed1ab_0 + - jedi=0.19.2=pyhff2d567_0 - jinja2=3.1.4=pyhd8ed1ab_0 - jmespath=1.0.1=pyhd8ed1ab_0 - joblib=1.4.2=pyhd8ed1ab_0 - - json-c=0.17=h8e11ae5_0 - - json5=0.9.25=pyhd8ed1ab_0 - - jsonpointer=2.4=py310h2ec42d9_3 - - jsonschema=4.22.0=pyhd8ed1ab_0 - - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0 - - jsonschema-with-format-nongpl=4.22.0=pyhd8ed1ab_0 - - jupyter=1.0.0=pyhd8ed1ab_10 - - jupyter-book=1.0.0=pyhd8ed1ab_0 - - jupyter-cache=1.0.0=pyhd8ed1ab_0 + - json-c=0.18=hc62ec3d_0 + - json5=0.9.28=pyhff2d567_0 + - jsondiff=2.0.0=pyhd8ed1ab_0 + - jsonpointer=3.0.0=py312hb401068_1 + - jsonschema=4.23.0=pyhd8ed1ab_0 + - jsonschema-specifications=2024.10.1=pyhd8ed1ab_0 + - jsonschema-with-format-nongpl=4.23.0=hd8ed1ab_0 + - jupyter=1.1.1=pyhd8ed1ab_0 + - jupyter-book=1.0.3=pyhd8ed1ab_0 + - jupyter-cache=1.0.1=pyhff2d567_0 - jupyter-resource-usage=0.7.1=pyhd8ed1ab_0 - jupyter_client=7.4.9=pyhd8ed1ab_0 - jupyter_console=6.6.3=pyhd8ed1ab_0 - - jupyter_core=5.7.2=py310h2ec42d9_0 + - jupyter_core=5.7.2=pyh31011fe_1 - jupyter_events=0.10.0=pyhd8ed1ab_0 - - jupyter_leaflet=0.19.1=pyhd8ed1ab_0 - - jupyter_server=1.24.0=pyhd8ed1ab_0 - - jupyter_server_fileid=0.9.2=pyhd8ed1ab_0 - - jupyter_server_ydoc=0.8.0=pyhd8ed1ab_0 - - jupyter_ydoc=0.2.4=pyhd8ed1ab_0 - - jupyterlab=3.6.7=pyhd8ed1ab_0 + - jupyter_leaflet=0.19.2=pyhd8ed1ab_0 + - jupyter_server=2.14.2=pyhd8ed1ab_0 + - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0 + - jupyterlab=3.5.3=pyhd8ed1ab_0 - jupyterlab-system-monitor=0.8.0=pyhd8ed1ab_2 - jupyterlab-topbar=0.6.1=pyhd8ed1ab_2 - - jupyterlab-variableinspector=3.2.1=pyhd8ed1ab_0 - - jupyterlab_code_formatter=2.2.1=pyhd8ed1ab_0 + - jupyterlab-variableinspector=3.2.4=pyhd8ed1ab_0 + - jupyterlab_code_formatter=3.0.2=pyhd8ed1ab_0 - jupyterlab_launcher=0.13.1=py_2 - jupyterlab_pygments=0.3.0=pyhd8ed1ab_0 - - jupyterlab_server=2.27.2=pyhd8ed1ab_0 - - jupyterlab_widgets=3.0.11=pyhd8ed1ab_0 - - jupytext=1.16.2=pyhd8ed1ab_1 + - jupyterlab_server=2.27.3=pyhd8ed1ab_0 + - jupyterlab_widgets=3.0.13=pyhd8ed1ab_0 + - jupytext=1.16.4=pyh80e38bb_0 - jxrlib=1.1=h10d778d_3 - - kealib=1.5.3=hb2b617a_1 - - kiwisolver=1.4.5=py310h88cfcbd_1 - - krb5=1.21.2=hb884880_0 + - kiwisolver=1.4.7=py312hc5c4d5f_0 + - krb5=1.21.3=h37d8d59_0 - latexcodec=2.0.1=pyh9f0ad1d_0 - - lazy_loader=0.4=pyhd8ed1ab_0 + - lazy-loader=0.4=pyhd8ed1ab_1 + - lazy_loader=0.4=pyhd8ed1ab_1 - lcms2=2.16=ha2f27b4_0 - - ld64_osx-64=711=had5d0d3_0 + - ld64_osx-64=951.9=h3c7722d_1 - lerc=4.0.0=hb486fe8_0 - - libabseil=20240116.2=cxx17_hc1bcbd7_0 + - libabseil=20240722.0=cxx17_hac325c4_1 - libaec=1.1.3=h73e2aa4_0 - libarchive=3.7.4=h20e244c_0 - - libarrow=16.1.0=h0870315_6_cpu - - libarrow-acero=16.1.0=hf036a51_6_cpu - - libarrow-dataset=16.1.0=hf036a51_6_cpu - 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libcurl=8.10.1=h58e7537_0 + - libcxx=19.1.4=hf95d169_0 + - libcxx-devel=19.1.4=h7c275be_0 + - libdeflate=1.21=hfdf4475_0 - libedit=3.1.20191231=h0678c8f_2 - libev=4.33=h10d778d_2 - libevent=2.1.12=ha90c15b_1 - - libexpat=2.6.2=h73e2aa4_0 + - libexpat=2.6.4=h240833e_0 - libffi=3.4.2=h0d85af4_5 - - libgd=2.3.3=h0dceb68_9 - - libgdal=3.9.0=h8fe29fd_5 - - libgettextpo=0.22.5=h5ff76d1_2 - - libgettextpo-devel=0.22.5=h5ff76d1_2 + - libgcrypt=1.11.0=hfdf4475_1 + - libgd=2.3.3=h2e77e4f_10 + - libgdal-core=3.9.2=ha8eff54_6 + - libgettextpo=0.22.5=hdfe23c8_3 + - libgettextpo-devel=0.22.5=hdfe23c8_3 - libgfortran=5.0.0=13_2_0_h97931a8_3 - libgfortran-devel_osx-64=13.2.0=h80d4556_3 - libgfortran5=13.2.0=h2873a65_3 - - libglib=2.80.2=h0f68cf7_0 - - libgoogle-cloud=2.24.0=h721cda5_0 - - libgoogle-cloud-storage=2.24.0=ha1c69e0_0 - - libgrpc=1.62.2=h384b2fc_0 - - libhwloc=2.10.0=default_h456cccd_1001 + - libgirepository=1.82.0=hdf4f3f7_0 + - libglib=2.82.2=hb6ef654_0 + - libgoogle-cloud=2.31.0=hd00c612_0 + - libgoogle-cloud-storage=2.31.0=h3f2b517_0 + - libgpg-error=1.51=hbc2728c_1 + - libgrpc=1.67.1=he6e0b18_0 + - libhwloc=2.11.1=default_h456cccd_1000 - libhwy=1.1.0=h7728843_0 - libiconv=1.17=hd75f5a5_2 - - libintl=0.22.5=h5ff76d1_2 - - libintl-devel=0.22.5=h5ff76d1_2 + - libintl=0.22.5=hdfe23c8_3 + - libintl-devel=0.22.5=hdfe23c8_3 - libjpeg-turbo=3.0.0=h0dc2134_1 - - libjxl=0.10.2=hb3b1962_0 - - libkml=1.3.0=hab3ca0e_1018 - - liblapack=3.9.0=22_osx64_openblas - - liblapacke=3.9.0=22_osx64_openblas + - libjxl=0.11.0=haf62dd7_2 + - libkml=1.3.0=h9ee1731_1021 + - liblapack=3.9.0=25_osx64_openblas + - liblapacke=3.9.0=25_osx64_openblas - libllvm14=14.0.6=hc8e404f_4 - - libllvm18=18.1.6=hd5e122f_0 - - libmagic=5.39=haaf19a9_0 + - libllvm19=19.1.4=hc29ff6c_0 + - libmagic=5.36=h0b31af3_2 - libnetcdf=4.9.2=nompi_h7334405_114 - - libnghttp2=1.58.0=h64cf6d3_1 - - libopenblas=0.3.27=openmp_hfef2a42_0 - - libparquet=16.1.0=h904a336_6_cpu - - libpng=1.6.43=h92b6c6a_0 - - libpq=16.3=h4501773_0 - - libprotobuf=4.25.3=h4e4d658_0 - 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libwebp-base=1.4.0=h10d778d_0 - - libxcb=1.15=hb7f2c08_0 - - libxml2=2.12.7=h3e169fe_1 - - libxslt=1.1.39=h03b04e6_0 - - libzip=1.10.1=hc158999_3 - - libzlib=1.2.13=h87427d6_6 + - libxcb=1.17.0=hf1f96e2_0 + - libxml2=2.13.5=h495214b_0 + - libzip=1.11.2=h31df5bb_0 + - libzlib=1.3.1=hd23fc13_2 - libzopfli=1.0.3=h046ec9c_0 - linkify-it-py=2.0.3=pyhd8ed1ab_0 - - livereload=2.6.3=pyh9f0ad1d_0 - - llvm-openmp=18.1.6=h15ab845_0 - - llvm-tools=18.1.6=hd5e122f_0 - - llvmlite=0.42.0=py310h7d48a1f_1 - - lmfit=1.2.2=pyhd8ed1ab_1 + - llvm-openmp=19.1.4=ha54dae1_0 + - llvm-tools=19.1.4=h3fe3016_0 + - llvm-tools-19=19.1.4=he90a8e3_0 + - llvmlite=0.43.0=py312hcc8fd36_1 + - lmfit=1.3.2=pyhd8ed1ab_0 - locket=1.0.0=pyhd8ed1ab_0 - - logmuse=0.2.6=pyh8c360ce_0 - - lxml=5.2.2=py310h27134ca_0 - - lz4=4.3.3=py310hf99a7a4_0 + - logmuse=0.2.8=pyhd8ed1ab_0 + - lz4=4.3.3=py312h83408cd_1 - lz4-c=1.9.4=hf0c8a7f_0 - lzo=2.10=h10d778d_1001 - - mapclassify=2.6.1=pyhd8ed1ab_0 + - mapclassify=2.8.1=pyhd8ed1ab_0 - markdown=3.6=pyhd8ed1ab_0 - 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terminado=0.18.1=pyh31c8845_0 - threadpoolctl=3.5.0=pyhc1e730c_0 - throttler=1.2.2=pyhd8ed1ab_0 - - tifffile=2024.5.22=pyhd8ed1ab_0 - - tiledb=2.23.0=h7f463ff_2 - - tinycss2=1.3.0=pyhd8ed1ab_0 + - tifffile=2024.9.20=pyhd8ed1ab_0 + - tinycss2=1.4.0=pyhd8ed1ab_0 - tk=8.6.13=h1abcd95_1 - toml=0.10.2=pyhd8ed1ab_0 - - tomli=2.0.1=pyhd8ed1ab_0 - - toolz=0.12.1=pyhd8ed1ab_0 - - toposort=1.10=pyhd8ed1ab_0 - - tornado=6.4.1=py310h936d840_0 - - tqdm=4.66.4=pyhd8ed1ab_0 + - tomli=2.1.0=pyhff2d567_0 + - toolz=1.0.0=pyhd8ed1ab_0 + - tornado=6.4.1=py312hb553811_1 + - tqdm=4.67.0=pyhd8ed1ab_0 - traitlets=5.14.3=pyhd8ed1ab_0 - traittypes=0.2.1=pyh9f0ad1d_2 - - tskit=0.5.6=py310hde789be_2 - - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0 - - typing-extensions=4.12.1=hd8ed1ab_0 - - typing_extensions=4.12.1=pyha770c72_0 - - tzcode=2024a=h10d778d_0 - - tzdata=2024a=h0c530f3_0 - - tzlocal=5.2=py310h2ec42d9_0 - - ubiquerg=0.7.0=pyhd8ed1ab_0 + - tskit=0.6.0=py312h59f7578_0 + - typer=0.13.1=pyhd8ed1ab_0 + - typer-slim=0.13.1=pyhff2d567_0 + - typer-slim-standard=0.13.1=hd8ed1ab_0 + - types-python-dateutil=2.9.0.20241003=pyhff2d567_0 + - typing-extensions=4.12.2=hd8ed1ab_0 + - typing_extensions=4.12.2=pyha770c72_0 + - typing_utils=0.1.0=pyhd8ed1ab_0 + - tzdata=2024b=hc8b5060_0 + - tzlocal=5.2=py312hb401068_1 + - ubiquerg=0.8.0=pyhd8ed1ab_0 - uc-micro-py=1.0.3=pyhd8ed1ab_0 - - umap-learn=0.5.5=py310h2ec42d9_1 - - uncertainties=3.2.0=pyhd8ed1ab_0 - - unicodedata2=15.1.0=py310h6729b98_0 + - umap-learn=0.5.7=py312hb401068_0 + - uncertainties=3.2.2=pyhd8ed1ab_1 + - unicodedata2=15.1.0=py312h3d0f464_1 - uri-template=1.3.0=pyhd8ed1ab_0 - uriparser=0.9.8=h6aefe2f_0 - - uritemplate=4.1.1=pyhd8ed1ab_0 - - urllib3=2.2.1=pyhd8ed1ab_0 - - uvicorn=0.30.1=py310h2ec42d9_0 - - validators=0.28.3=pyhd8ed1ab_0 + - urllib3=2.2.3=pyhd8ed1ab_0 + - uvicorn=0.32.0=pyh31011fe_1 + - validators=0.34.0=pyhd8ed1ab_0 - veracitools=0.1.3=py_0 - - voila=0.3.8=pyhd8ed1ab_0 - - voila-gridstack=0.3.1=pyhd8ed1ab_1 - - watchdog=4.0.1=py310h936d840_0 - - watchfiles=0.22.0=py310h12a1ced_0 + - voila=0.5.8=pyhd8ed1ab_1 + - voila-gridstack=0.4.0=pyhd8ed1ab_0 + - watchdog=6.0.0=py312h01d7ebd_0 + - watchfiles=0.24.0=py312h669792a_1 - wcwidth=0.2.13=pyhd8ed1ab_0 - - webcolors=24.6.0=pyhd8ed1ab_0 + - webcolors=24.8.0=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - websocket-client=1.8.0=pyhd8ed1ab_0 - - websockets=12.0=py310hb372a2b_0 - - werkzeug=3.0.3=pyhd8ed1ab_0 - - wheel=0.43.0=pyhd8ed1ab_1 - - widgetsnbextension=3.5.2=py310h2ec42d9_1 - - wrapt=1.16.0=py310hb372a2b_0 - - xarray=2024.5.0=pyhd8ed1ab_0 - - xerces-c=3.2.5=hbbe9ea5_0 + - websockets=14.1=py312h01d7ebd_0 + - wheel=0.45.0=pyhd8ed1ab_0 + - widgetsnbextension=3.5.1=pyh9f0ad1d_3 + - wrapt=1.16.0=py312hb553811_1 + - xarray=2024.7.0=pyhd8ed1ab_0 + - xerces-c=3.2.5=h197e74d_2 - xlrd=2.0.1=pyhd8ed1ab_3 - xlwt=1.3.0=py_1 - - xorg-libxau=1.0.11=h0dc2134_0 - - xorg-libxdmcp=1.1.3=h35c211d_0 - - xyzservices=2024.6.0=pyhd8ed1ab_0 + - xorg-libxau=1.0.11=h00291cd_1 + - xorg-libxdmcp=1.1.5=h00291cd_0 + - xyzservices=2024.9.0=pyhd8ed1ab_0 - xz=5.2.6=h775f41a_0 - - y-py=0.5.9=py310hb28ce15_0 - yaml=0.2.5=h0d85af4_2 - - yarl=1.9.4=py310hb372a2b_0 - - ypy-websocket=0.8.2=pyhd8ed1ab_0 + - yarl=1.17.2=py312h01d7ebd_0 - yte=1.5.4=pyha770c72_0 - zarr=2.15.0=pyhd8ed1ab_1 - - zeromq=4.3.5=hde137ed_4 - - zfp=1.0.1=h295e98d_0 + - zeromq=4.3.5=h7130eaa_7 + - zfp=1.0.1=h469392a_2 - zict=3.0.0=pyhd8ed1ab_0 - - zipp=3.17.0=pyhd8ed1ab_0 - - zlib=1.2.13=h87427d6_6 - - zlib-ng=2.0.7=hb7f2c08_0 + - zipp=3.21.0=pyhd8ed1ab_0 + - zlib=1.3.1=hd23fc13_2 + - zlib-ng=2.2.2=hac325c4_0 + - zstandard=0.23.0=py312h7122b0e_1 - zstd=1.5.6=h915ae27_0 - pip: - - biotite==0.40.0 + - anjl==1.4.0 - dash-core-components==2.0.0 - - dash-cytoscape==1.0.1 + - dash-cytoscape==1.0.2 - dash-html-components==2.0.0 - dash-table==5.0.0 - - igv-notebook==0.5.2 - - ipinfo==5.0.1 - - lxml-html-clean==0.1.1 - - malariagen-data==10.0.0 - - numpydoc-decorator==2.2.0 - - orjson==3.10.3 + - flask==3.0.3 + - igv-notebook==0.6.1 + - ipinfo==5.1.1 + - lxml==5.3.0 + - lxml-html-clean==0.4.1 + - malariagen-data==13.5.0 + - numpydoc-decorator==2.2.1 + - orjson==3.10.11 - petlx==1.0.3 - - prettypandas==0.0.4 - - protopunica==0.14.8.post1 + - protopunica==0.14.8.post2 - pyerf==1.0.1 - - pyfaidx==0.8.1.1 + - pyfaidx==0.8.1.3 - python-gist==0.10.6 - python-gnupg==0.4.9 + - scikit-allel==1.3.13 - scikits-bootstrap==1.1.0 - - sh==2.0.7 + - sgkit==0.9.0 + - sh==2.1.0 - termcolor==2.3.0 - - typeguard==4.3.0 - - yaspin==3.0.2 -prefix: /Users/runner/work/binder/binder/deps/conda/envs/binder-6cbd385 + - typeguard==4.4.1 + - werkzeug==3.0.6 + - yaspin==3.1.0 +prefix: /Users/runner/work/mgenv/mgenv/deps/conda/envs/mgenv-5b0ff24 diff --git a/environment-pinned-ubuntu-latest.yml b/environment-pinned-ubuntu-latest.yml index 07acae7..7ee3d4a 100644 --- a/environment-pinned-ubuntu-latest.yml +++ b/environment-pinned-ubuntu-latest.yml @@ -1,757 +1,757 @@ -name: binder-6cbd385 +name: mgenv-5b0ff24 channels: - conda-forge - bioconda - - defaults - conda-forge/label/broken dependencies: - _libgcc_mutex=0.1=conda_forge - _openmp_mutex=4.5=2_kmp_llvm - - accessible-pygments=0.0.4=pyhd8ed1ab_0 + - accessible-pygments=0.0.5=pyhd8ed1ab_0 + - adal=1.2.7=pyhd8ed1ab_0 + - adlfs=2024.7.0=pyhd8ed1ab_0 - affine=2.4.0=pyhd8ed1ab_0 - - aiobotocore=2.13.0=pyhd8ed1ab_0 - - aioeasywebdav=2.4.0=pyha770c72_0 - - aiofiles=22.1.0=pyhd8ed1ab_0 - - aiohttp=3.9.5=py310h2372a71_0 - - aioitertools=0.11.0=pyhd8ed1ab_0 + - aiobotocore=2.15.2=pyhd8ed1ab_0 + - aiohappyeyeballs=2.4.3=pyhd8ed1ab_0 + - aiohttp=3.11.6=py312h178313f_0 + - aioitertools=0.12.0=pyhd8ed1ab_0 - aiosignal=1.3.1=pyhd8ed1ab_0 - - aiosqlite=0.20.0=pyhd8ed1ab_0 - alabaster=0.7.16=pyhd8ed1ab_0 - - almosthere=2.0.2=h46c0cb4_1 - - alsa-lib=1.2.11=hd590300_1 - - altair=5.3.0=pyhd8ed1ab_0 + - alsa-lib=1.2.13=hb9d3cd8_0 + - altair=5.4.1=pyhd8ed1ab_2 - amply=0.1.6=pyhd8ed1ab_0 - - anyio=3.7.1=pyhd8ed1ab_0 - - aom=3.9.0=hac33072_0 + - annotated-types=0.7.0=pyhd8ed1ab_0 + - anyio=4.6.2.post1=pyhd8ed1ab_0 + - aom=3.9.1=hac33072_0 - appdirs=1.4.4=pyh9f0ad1d_0 - apricot-select=0.6.1=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - - argon2-cffi-bindings=21.2.0=py310h2372a71_4 + - argon2-cffi-bindings=21.2.0=py312h66e93f0_5 + - argparse-dataclass=2.0.0=pyhd8ed1ab_0 - arrow=1.3.0=pyhd8ed1ab_0 - asciitree=0.3.3=py_2 - - asteval=0.9.33=pyhd8ed1ab_0 + - asteval=1.0.5=pyhd8ed1ab_0 - asttokens=2.4.1=pyhd8ed1ab_0 - - async-timeout=4.0.3=pyhd8ed1ab_0 - atk-1.0=2.38.0=h04ea711_2 - - attmap=0.13.2=pyhd8ed1ab_0 - - attr=2.5.1=h166bdaf_1 - - attrs=23.2.0=pyh71513ae_0 - - aws-c-auth=0.7.22=h96bc93b_2 - - aws-c-cal=0.6.14=h88a6e22_1 - - aws-c-common=0.9.19=h4ab18f5_0 - - aws-c-compression=0.2.18=h83b837d_6 - - aws-c-event-stream=0.4.2=ha47c788_12 - - aws-c-http=0.8.1=h29d6fba_17 - - aws-c-io=0.14.8=h21d4f22_5 - - aws-c-mqtt=0.10.4=h759edc4_4 - - aws-c-s3=0.5.9=h594631b_3 - - aws-c-sdkutils=0.1.16=h83b837d_2 - - aws-checksums=0.1.18=h83b837d_6 - - aws-crt-cpp=0.26.9=he3a8b3b_0 - - aws-sdk-cpp=1.11.329=hba8bd5f_3 - - azure-core-cpp=1.11.1=h91d86a7_1 - - azure-identity-cpp=1.6.0=hf1915f5_1 - - azure-storage-blobs-cpp=12.10.0=h00ab1b0_1 - - azure-storage-common-cpp=12.5.0=h94269e2_4 - - babel=2.14.0=pyhd8ed1ab_0 - - bcftools=1.20=h8b25389_0 - - bcrypt=4.1.3=py310he421c4c_0 + - attrs=24.2.0=pyh71513ae_0 + - aws-c-auth=0.8.0=hb88c0a9_10 + - aws-c-cal=0.8.0=hecf86a2_2 + - aws-c-common=0.10.3=hb9d3cd8_0 + - aws-c-compression=0.3.0=hf42f96a_2 + - aws-c-event-stream=0.5.0=h1ffe551_7 + - aws-c-http=0.9.1=hab05fe4_2 + - aws-c-io=0.15.2=hdeadb07_2 + - aws-c-mqtt=0.11.0=h7bd072d_8 + - aws-c-s3=0.7.1=h3a84f74_3 + - aws-c-sdkutils=0.2.1=hf42f96a_1 + - aws-checksums=0.2.2=hf42f96a_1 + - aws-crt-cpp=0.29.4=h21d7256_1 + - aws-sdk-cpp=1.11.449=h1a02111_2 + - azure-core=1.32.0=pyhff2d567_0 + - azure-core-cpp=1.14.0=h5cfcd09_0 + - azure-datalake-store=0.0.51=pyh9f0ad1d_0 + - azure-identity=1.17.1=pyhd8ed1ab_0 + - azure-identity-cpp=1.10.0=h113e628_0 + - azure-storage-blob=12.24.0=pyhff2d567_0 + - azure-storage-blobs-cpp=12.13.0=h3cf044e_1 + - azure-storage-common-cpp=12.8.0=h736e048_1 + - azure-storage-files-datalake-cpp=12.12.0=ha633028_1 + - babel=2.16.0=pyhd8ed1ab_0 + - backoff=2.2.1=pyhd8ed1ab_0 + - bcftools=1.21=h8b25389_0 + - bcrypt=4.2.1=py312h12e396e_0 - beautifulsoup4=4.12.3=pyha770c72_0 - - bed-reader=1.0.0=py310h93aa1c4_0 - - bgen=4.1.3=ha0ad84f_0 - - binutils_impl_linux-64=2.40=ha1999f0_2 - - binutils_linux-64=2.40=hdade7a5_3 - - biopython=1.83=py310h2372a71_0 - - black=24.4.2=py310hff52083_0 - - blas=2.122=openblas - - blas-devel=3.9.0=22_linux64_openblas - - bleach=6.1.0=pyhd8ed1ab_0 - - blinker=1.8.2=pyhd8ed1ab_0 - - blosc=1.21.5=hc2324a3_1 - - bokeh=3.4.1=pyhd8ed1ab_0 - - boto3=1.34.106=pyhd8ed1ab_0 - - botocore=1.34.106=pyge310_1234567_0 + - binutils_impl_linux-64=2.43=h4bf12b8_2 + - binutils_linux-64=2.43=h4852527_2 + - biopython=1.84=py312h9a8786e_0 + - black=24.10.0=py312h7900ff3_0 + - blas=2.125=openblas + - blas-devel=3.9.0=25_linux64_openblas + - bleach=6.2.0=pyhd8ed1ab_0 + - blinker=1.9.0=pyhff2d567_0 + - blosc=1.21.6=hef167b5_0 + - bokeh=3.5.2=pyhd8ed1ab_0 + - boto3=1.35.36=pyhd8ed1ab_0 + - botocore=1.35.36=pyge310_1234567_0 - 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xcb-util-image=0.4.0=hb711507_2 + - xcb-util-keysyms=0.4.1=hb711507_0 + - xcb-util-renderutil=0.3.10=hb711507_0 + - xcb-util-wm=0.4.2=hb711507_0 + - xerces-c=3.2.5=h988505b_2 + - xkeyboard-config=2.43=hb9d3cd8_0 - xlrd=2.0.1=pyhd8ed1ab_3 - xlwt=1.3.0=py_1 - - xorg-kbproto=1.0.7=h7f98852_1002 - - xorg-libice=1.1.1=hd590300_0 - - xorg-libsm=1.2.4=h7391055_0 - - xorg-libx11=1.8.9=h8ee46fc_0 - - xorg-libxau=1.0.11=hd590300_0 - - xorg-libxdmcp=1.1.3=h7f98852_0 - - xorg-libxext=1.3.4=h0b41bf4_2 - - xorg-libxrender=0.9.11=hd590300_0 - - xorg-renderproto=0.11.1=h7f98852_1002 - - xorg-xextproto=7.3.0=h0b41bf4_1003 - - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002 - - xorg-xproto=7.0.31=h7f98852_1007 - - xyzservices=2024.6.0=pyhd8ed1ab_0 + - xorg-libice=1.1.1=hb9d3cd8_1 + - xorg-libsm=1.2.4=he73a12e_1 + - xorg-libx11=1.8.10=h4f16b4b_0 + - xorg-libxau=1.0.11=hb9d3cd8_1 + - xorg-libxcomposite=0.4.6=hb9d3cd8_2 + - xorg-libxcursor=1.2.3=hb9d3cd8_0 + - xorg-libxdamage=1.1.6=hb9d3cd8_0 + - xorg-libxdmcp=1.1.5=hb9d3cd8_0 + - xorg-libxext=1.3.6=hb9d3cd8_0 + - xorg-libxfixes=6.0.1=hb9d3cd8_0 + - xorg-libxi=1.8.2=hb9d3cd8_0 + - xorg-libxrandr=1.5.4=hb9d3cd8_0 + - xorg-libxrender=0.9.11=hb9d3cd8_1 + - xorg-libxtst=1.2.5=hb9d3cd8_3 + - xorg-libxxf86vm=1.1.5=hb9d3cd8_4 + - xorg-xorgproto=2024.1=hb9d3cd8_1 + - xyzservices=2024.9.0=pyhd8ed1ab_0 - xz=5.2.6=h166bdaf_0 - - y-py=0.5.9=py310h4426083_0 - yaml=0.2.5=h7f98852_2 - - yarl=1.9.4=py310h2372a71_0 - - ypy-websocket=0.8.2=pyhd8ed1ab_0 + - yarl=1.17.2=py312h66e93f0_0 - yte=1.5.4=pyha770c72_0 - zarr=2.15.0=pyhd8ed1ab_1 - - zeromq=4.3.5=h75354e8_4 - - zfp=1.0.1=h59595ed_0 + - zeromq=4.3.5=h3b0a872_7 + - zfp=1.0.1=h5888daf_2 - zict=3.0.0=pyhd8ed1ab_0 - - zipp=3.17.0=pyhd8ed1ab_0 - - zlib=1.2.13=h4ab18f5_6 - - zlib-ng=2.0.7=h0b41bf4_0 + - zipp=3.21.0=pyhd8ed1ab_0 + - zlib=1.3.1=hb9d3cd8_2 + - zlib-ng=2.2.2=h5888daf_0 + - zstandard=0.23.0=py312hef9b889_1 - zstd=1.5.6=ha6fb4c9_0 - pip: - - biotite==0.40.0 + - anjl==1.4.0 - dash-core-components==2.0.0 - - dash-cytoscape==1.0.1 + - dash-cytoscape==1.0.2 - dash-html-components==2.0.0 - dash-table==5.0.0 - - igv-notebook==0.5.2 - - ipinfo==5.0.1 - - lxml-html-clean==0.1.1 - - malariagen-data==10.0.0 - - numpydoc-decorator==2.2.0 - - orjson==3.10.3 + - flask==3.0.3 + - igv-notebook==0.6.1 + - ipinfo==5.1.1 + - lxml==5.3.0 + - lxml-html-clean==0.4.1 + - malariagen-data==13.5.0 + - numpydoc-decorator==2.2.1 + - orjson==3.10.11 - petlx==1.0.3 - - prettypandas==0.0.4 - - protopunica==0.14.8.post1 + - protopunica==0.14.8.post2 - pyerf==1.0.1 - - pyfaidx==0.8.1.1 + - pyfaidx==0.8.1.3 - python-gist==0.10.6 - python-gnupg==0.4.9 + - scikit-allel==1.3.13 - scikits-bootstrap==1.1.0 - - sh==2.0.7 + - sgkit==0.9.0 + - sh==2.1.0 - termcolor==2.3.0 - - typeguard==4.3.0 - - yaspin==3.0.2 -prefix: /home/runner/work/binder/binder/deps/conda/envs/binder-6cbd385 + - typeguard==4.4.1 + - werkzeug==3.0.6 + - yaspin==3.1.0 +prefix: /home/runner/work/mgenv/mgenv/deps/conda/envs/mgenv-5b0ff24