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.travis.yml
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.travis.yml
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language: c
env:
- TRAVIS_PYTHON_VERSION=2.7
- TRAVIS_PYTHON_VERSION=3.5
os:
- linux
- osx
# Setup anaconda
before_install:
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then pip install virtualenv --user ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then virtualenv foo; source foo/bin/activate; pip install planemo ; deactivate ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then curl http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -o miniconda.sh ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "3.5" ]]; then curl http://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh ; fi
- if [[ "$TRAVIS_OS_NAME" == "osx" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then curl https://repo.continuum.io/miniconda/Miniconda-latest-MacOSX-x86_64.sh -o miniconda.sh ; fi
- if [[ "$TRAVIS_OS_NAME" == "osx" && "$TRAVIS_PYTHON_VERSION" == "3.5" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -o miniconda.sh ; fi
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
# Useful for debugging any issues with conda
- conda info -a
# Install packages
install:
- conda install --yes python=$TRAVIS_PYTHON_VERSION numpy scipy matplotlib=1.5.0 nose flake8
- conda install --yes -c https://conda.anaconda.org/bioconda pysam pyBigWig twobitreader
- python setup.py install
# command to run tests
script:
- flake8 . --exclude=.venv,.build,foo,build,deeptoolsintervals/__init__.py --ignore=E501,F403,E402,F999
- export owd=`pwd`
- cd ~/ && nosetests --with-doctest -sv deeptools deeptoolsintervals
- cd ${owd}
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then export PATH=`echo $PATH | sed -e 's/\/home\/travis\/miniconda\/bin://'` ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then /home/travis/build/fidelram/deepTools/foo/bin/planemo lint galaxy/wrapper/ ; fi
- if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then ./.planemo.sh ; fi
sudo: false
services:
- postgresql