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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>org.campagnelab.build-utils</groupId>
<artifactId>maven-parent</artifactId>
<version>1.0.3</version>
</parent>
<groupId>org.campagnelab.mesca</groupId>
<artifactId>mesca</artifactId>
<version>1.0-SNAPSHOT</version>
<packaging>jar</packaging>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<build>
<resources>
<resource>
<directory>src/main/java</directory>
<includes>
<include>**/*.jsap</include>
</includes>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<shadedArtifactAttached>true</shadedArtifactAttached>
<shadedClassifierName>mesca-dist</shadedClassifierName>
<finalName>mesca-dist</finalName>
<minimizeJar>false</minimizeJar>
<filters>
<filter>
<artifact>log4j:log4j</artifact>
<includes>
<include>**</include>
</includes>
</filter>
<filter>
<artifact>commons-logging:commons-logging</artifact>
<includes>
<include>**</include>
</includes>
</filter>
</filters>
<artifactSet>
<excludes>
<exclude>junit:junit</exclude>
</excludes>
</artifactSet>
<transformers>
<transformer
implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
</transformer>
</transformers>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.4</version>
<executions>
<execution>
<id>sdk</id>
<configuration>
<descriptors>
<descriptor>src/assemble/distribution.xml</descriptor>
</descriptors>
</configuration>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.9</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.campagnelab.goby</groupId>
<artifactId>goby</artifactId>
<version>2.3.3</version>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>LATEST</version>
</dependency>
<dependency>
<groupId>com.martiansoftware</groupId>
<artifactId>jsap</artifactId>
<version>2.1</version>
</dependency>
<dependency>
<groupId>it.unimi.dsi</groupId>
<artifactId>fastutil</artifactId>
<version>6.5.11</version>
</dependency>
<dependency>
<groupId>colt</groupId>
<artifactId>colt</artifactId>
<version>1.2.0</version>
</dependency>
</dependencies>
</project>