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When I use -M option to report MUM indexes, not all of the genomes are included - so I tried to use -c option to force include all genomes in the directory, but then get
Traceback (most recent call last):
File "<string>", line 876, in <module>
AttributeError: 'str' object has no attribute 'close'
Is there another way of getting MUMi for all genomes? When running parsnp without -M option a file called all.mumi is generated but this doesn't include file names. recruitedgenomes.lst contains file names and MUMi, but only for those that were recruited (which is not the entire dataset).
The text was updated successfully, but these errors were encountered:
Hi,
When I use -M option to report MUM indexes, not all of the genomes are included - so I tried to use -c option to force include all genomes in the directory, but then get
Is there another way of getting MUMi for all genomes? When running parsnp without -M option a file called all.mumi is generated but this doesn't include file names. recruitedgenomes.lst contains file names and MUMi, but only for those that were recruited (which is not the entire dataset).
The text was updated successfully, but these errors were encountered: