diff --git a/conf/genomics.config b/conf/genomics.config index 7112226..a2f056e 100644 --- a/conf/genomics.config +++ b/conf/genomics.config @@ -1,6 +1,6 @@ params { - max_cpus=64 - max_memory=600.GB + max_cpus=80 + max_memory=1000.GB fb_chunksize=1000000 } @@ -8,6 +8,26 @@ process { scratch = true stageInMode = 'symlink' executor = 'local' + + withName: 'gatk_haplotype_caller'{ + cpus = { check_max( 2 * task.attempt, 'cpus' ) } + memory = { check_max( 10.GB * task.attempt, 'memory' ) } + } + + withName: 'gatk_genomicsdb_import' { + cpus = { check_max( 2 * task.attempt, 'cpus' ) } + } + + withName: 'gatk_genotypegvcfs' { + memory = { check_max( 8.GB * task.attempt, 'memory' ) } + } + + + withName: 'stat'{ + cpus = { check_max( 2 * task.attempt, 'cpus' ) } + } + + } singularity {