From 65b6ef90a1b9e3cef6ff1895407a3bc5735534ba Mon Sep 17 00:00:00 2001 From: Stefan Hahmann Date: Fri, 7 Jun 2024 13:42:28 +0200 Subject: [PATCH] Add a unit test for ProjectSaver --- .../mastodon/mamut/io/ProjectSaverTest.java | 62 +++++++++++++++++++ 1 file changed, 62 insertions(+) create mode 100644 src/test/java/org/mastodon/mamut/io/ProjectSaverTest.java diff --git a/src/test/java/org/mastodon/mamut/io/ProjectSaverTest.java b/src/test/java/org/mastodon/mamut/io/ProjectSaverTest.java new file mode 100644 index 000000000..3d38710dd --- /dev/null +++ b/src/test/java/org/mastodon/mamut/io/ProjectSaverTest.java @@ -0,0 +1,62 @@ +package org.mastodon.mamut.io; + +import ij.ImagePlus; +import net.imagej.ImgPlus; +import net.imagej.axis.Axes; +import net.imagej.axis.AxisType; +import net.imglib2.img.Img; +import net.imglib2.img.array.ArrayImgs; +import net.imglib2.img.display.imagej.ImgToVirtualStack; +import net.imglib2.type.numeric.real.FloatType; +import org.junit.Test; +import org.mastodon.mamut.ProjectModel; +import org.mastodon.mamut.io.project.MamutProject; +import org.mastodon.mamut.model.Model; +import org.mastodon.views.bdv.SharedBigDataViewerData; +import org.scijava.Context; + +import java.io.File; +import java.io.IOException; +import java.util.Objects; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNotNull; +import static org.junit.Assert.assertTrue; + +public class ProjectSaverTest +{ + @Test + public void testSaveProject() throws IOException + { + try (Context context = new Context()) + { + Model model = new Model(); + Img< FloatType > image = ArrayImgs.floats( 1, 1, 1 ); + File mastodon = File.createTempFile( "test", ".mastodon" ); + ProjectModel appModel = wrapAsAppModel( image, model, context, mastodon ); + ProjectSaver.saveProject( mastodon, appModel ); + assertNotNull( mastodon ); + assertTrue( mastodon.exists() ); + assertTrue( mastodon.isFile() ); + assertTrue( mastodon.length() > 0 ); + assertEquals( mastodon, appModel.getProject().getProjectRoot() ); + } + } + + private static ProjectModel wrapAsAppModel( final Img< FloatType > image, final Model model, final Context context, final File file ) + throws IOException + { + final SharedBigDataViewerData sharedBigDataViewerData = asSharedBdvDataXyz( image ); + MamutProject mamutProject = new MamutProject( file ); + File datasetXmlFile = File.createTempFile( "test", ".xml" ); + mamutProject.setDatasetXmlFile( datasetXmlFile ); + return ProjectModel.create( context, model, sharedBigDataViewerData, mamutProject ); + } + + private static SharedBigDataViewerData asSharedBdvDataXyz( final Img< FloatType > image1 ) + { + final ImagePlus image = + ImgToVirtualStack.wrap( new ImgPlus<>( image1, "image", new AxisType[] { Axes.X, Axes.Y, Axes.Z, Axes.TIME } ) ); + return Objects.requireNonNull( SharedBigDataViewerData.fromImagePlus( image ) ); + } +}