DESCRIPTION

Package: DiscoRhythm
Title: Interactive Workflow for Discovering Rhythmicity in Biological Data
Version: 1.11.1
Authors@R: c(
    person("Matthew", "Carlucci",
    email = "Matthew.Carlucci@camh.ca",
    role = c("aut", "cre")),
    person("Algimantas", "Kriščiūnas",
    email = "algimantas.krisciunas@gmc.vu.lt",
    role = c("aut")),
    person("Haohan", "Li",
    email = "Xavier.li@edu.uwaterloo.ca",
    role = c("aut")),
    person("Povilas", "Gibas",
    email = "povilas.gibas@bti.vu.lt",
    role = c("aut")),
    person("Karolis", "Koncevičius",
    email = "karolis.koncevicius@gmc.vu.lt",
    role = c("aut")),
    person("Art", "Petronis",
    email = "Art.Petronis@camh.ca",
    role = c("aut")),
    person("Gabriel", "Oh",
    email = "Gabriel.Oh@camh.ca",
    role = c("aut"))
    )
Description: Set of functions for estimation of cyclical characteristics, such 
  as period, phase, amplitude, and statistical significance in large temporal 
  datasets. Supporting functions are available for quality control, 
  dimensionality reduction, spectral analysis, and analysis of experimental 
  replicates. Contains a R Shiny web interface to execute all workflow steps.
Depends: R (>= 3.6.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Imports: 
    matrixTests,
    matrixStats,
    MetaCycle (>= 1.2.0),
    data.table,
    ggplot2,
    ggExtra,
    dplyr,
    broom,
    shiny,
    shinyBS,
    shinycssloaders,
    shinydashboard,
    shinyjs,
    BiocStyle,
    rmarkdown,
    knitr,
    kableExtra,
    magick,
    VennDiagram,
    UpSetR,
    heatmaply,
    viridis,
    plotly,
    DT,
    gridExtra,
    methods,
    stats,
    SummarizedExperiment,
    BiocGenerics,
    S4Vectors,
    zip,
    reshape2
Suggests: testthat
SystemRequirements: To generate html reports pandoc 
  (http://pandoc.org/installing.html) is required.
biocViews: Software, TimeCourse, QualityControl, Visualization, GUI,
  PrincipalComponent
URL: https://github.com/matthewcarlucci/DiscoRhythm
BugReports: https://github.com/matthewcarlucci/DiscoRhythm/issues