Test & bugfix release

v0.1.6 [2015/08/27] Full testing of large scale model repositories and fixing of discovered bugs.

• Testing, bug fixes and documentation
• sbml-test-cases models successfully parsed
• BIGG models successfully parsed
• cobrapy test models parsed
• full SBML FBC v2 support
• basic SBML distrib support

FBC support, SBML Validator, SBML master graph

• SBO Name and definitions for information
• Parsing of rateRules, InitialAssignments and kineticLaws
• Display of NamedSBase attributes in information
• Example loader (menu) & examples added
• FBC support
• NetworkReader tests (passed all BioModels r29 curated models)
• master SBML graph (compartments, kinetics, parameters, ...)
• File selection & multiple file import ported
• SBML validator ported

Biomodel Webservice & Qual release

• support of multiple networks, views and subnetworks
• qualitative model support
• biomodel webservice search & retrieval
• redesign & bug fixes

Release of cy3sbml core functionality

Porting of core parts of cy3sbml are finished.
Amongst others

• cy3sbml VisualStyles implemented and applied
• Support of multiple networks and views (sub networks)
• Model information is now displayed
• RDF annotations displayed (MIRIAM)
• proxy support
• first unit tests created and integrated with maven
• logging with log4j and slf4j implemented (cy3sbml.log)
• support of cy3sbml properties for general settings like preferred VisualStyle
• node EventListener for updating annotation information
• application of layout after generating views

Documentation Update Release

Detailed build instructions and documentation added.