Installation issue

[kunalmenda]

Hi, thanks for this awesome package! I'm having some installation issues, and have shown the console output below.

I'm running MacOS Catalina, and attempting to pip install in a conda environment.

Please let me know if you have any suggestions, or would like additional information. Thanks!

pip install pyslds
Collecting pyslds
  Downloading pyslds-0.0.3.tar.gz (11 kB)
Requirement already satisfied: numpy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds) (1.16.1)
Requirement already satisfied: scipy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds) (1.3.1)
Requirement already satisfied: matplotlib in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds) (3.0.2)
Collecting pybasicbayes
  Downloading pybasicbayes-0.2.2.tar.gz (212 kB)
     |████████████████████████████████| 212 kB 2.9 MB/s 
Collecting pyhsmm
  Downloading pyhsmm-0.1.7.tar.gz (513 kB)
     |████████████████████████████████| 513 kB 2.7 MB/s 
    ERROR: Command errored out with exit status 1:
     command: /Users/kunalmenda/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/setup.py'"'"'; __file__='"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-pip-egg-info-qye15z90
         cwd: /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/
    Complete output (30 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/setup.py", line 76, in <module>
        urlretrieve(eigenurl, eigentarpath)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 248, in urlretrieve
        with contextlib.closing(urlopen(url, data)) as fp:
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 223, in urlopen
        return opener.open(url, data, timeout)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open
        response = meth(req, response)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response
        'http', request, response, code, msg, hdrs)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 564, in error
        result = self._call_chain(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain
        result = func(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 756, in http_error_302
        return self.parent.open(new, timeout=req.timeout)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open
        response = meth(req, response)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response
        'http', request, response, code, msg, hdrs)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 570, in error
        return self._call_chain(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain
        result = func(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 650, in http_error_default
        raise HTTPError(req.full_url, code, msg, hdrs, fp)
    urllib.error.HTTPError: HTTP Error 404: Not Found
    Downloading Eigen...
    ----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.```

[slinderman]

Hi Kunal, please try cloning the latest from github and installing from source (`cd pylds; pip install -e .`).

…

On Wed, Nov 18, 2020 at 5:26 PM Kunal Menda ***@***.***> wrote: Hi, thanks for this awesome package! I'm having some installation issues, and have shown the console output below. I'm running MacOS Catalina, and attempting to pip install in a conda environment. Please let me know if you have any suggestions, or would like additional information. Thanks! pip install pyslds Collecting pyslds Downloading pyslds-0.0.3.tar.gz (11 kB) Requirement already satisfied: numpy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds) (1.16.1) Requirement already satisfied: scipy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds) (1.3.1) Requirement already satisfied: matplotlib in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds) (3.0.2) Collecting pybasicbayes Downloading pybasicbayes-0.2.2.tar.gz (212 kB) |████████████████████████████████| 212 kB 2.9 MB/s Collecting pyhsmm Downloading pyhsmm-0.1.7.tar.gz (513 kB) |████████████████████████████████| 513 kB 2.7 MB/s ERROR: Command errored out with exit status 1: command: /Users/kunalmenda/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/setup.py'"'"'; __file__='"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-pip-egg-info-qye15z90 cwd: /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/ Complete output (30 lines): Traceback (most recent call last): File "<string>", line 1, in <module> File "/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-h8gmheg7/pyhsmm/setup.py", line 76, in <module> urlretrieve(eigenurl, eigentarpath) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 248, in urlretrieve with contextlib.closing(urlopen(url, data)) as fp: File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 223, in urlopen return opener.open(url, data, timeout) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open response = meth(req, response) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response 'http', request, response, code, msg, hdrs) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 564, in error result = self._call_chain(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain result = func(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 756, in http_error_302 return self.parent.open(new, timeout=req.timeout) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open response = meth(req, response) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response 'http', request, response, code, msg, hdrs) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 570, in error return self._call_chain(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain result = func(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 650, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found Downloading Eigen... ---------------------------------------- ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.``` — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#32>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABK7AKB2O2TXEA2MUZ4X6VTSQRX3JANCNFSM4T2YCZHQ> .

[kunalmenda]

Thanks for the swift response!

I'm getting the same error when I try this:

git clone https://github.com/mattjj/pyslds.git
cd pyslds/
pip install -e .
Obtaining file:///Users/kunalmenda/Desktop/pyslds
Requirement already satisfied: numpy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds==0.0.3) (1.16.1)
Requirement already satisfied: scipy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds==0.0.3) (1.3.1)
Requirement already satisfied: matplotlib in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds==0.0.3) (3.0.2)
Collecting pybasicbayes
  Using cached pybasicbayes-0.2.2.tar.gz (212 kB)
Collecting pyhsmm
  Using cached pyhsmm-0.1.7.tar.gz (513 kB)
    ERROR: Command errored out with exit status 1:
     command: /Users/kunalmenda/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/setup.py'"'"'; __file__='"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-pip-egg-info-_ibd7kv_
         cwd: /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/
    Complete output (30 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/setup.py", line 76, in <module>
        urlretrieve(eigenurl, eigentarpath)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 248, in urlretrieve
        with contextlib.closing(urlopen(url, data)) as fp:
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 223, in urlopen
        return opener.open(url, data, timeout)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open
        response = meth(req, response)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response
        'http', request, response, code, msg, hdrs)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 564, in error
        result = self._call_chain(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain
        result = func(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 756, in http_error_302
        return self.parent.open(new, timeout=req.timeout)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open
        response = meth(req, response)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response
        'http', request, response, code, msg, hdrs)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 570, in error
        return self._call_chain(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain
        result = func(*args)
      File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 650, in http_error_default
        raise HTTPError(req.full_url, code, msg, hdrs, fp)
    urllib.error.HTTPError: HTTP Error 404: Not Found
    Downloading Eigen...
    ----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

[slinderman]

I’d do the same with dependencies PyBasicbayes, PyHSMM, Pylds, etc. you can see it’s breaking during the PyHSMM install. Best, Scott

…

On Nov 18, 2020, at 5:36 PM, Kunal Menda ***@***.***> wrote:  Thanks for the swift response! I'm getting the same error when I try this: git clone https://github.com/mattjj/pyslds.git cd pyslds/ pip install -e . Obtaining file:///Users/kunalmenda/Desktop/pyslds Requirement already satisfied: numpy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds==0.0.3) (1.16.1) Requirement already satisfied: scipy in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds==0.0.3) (1.3.1) Requirement already satisfied: matplotlib in /Users/kunalmenda/anaconda3/lib/python3.6/site-packages (from pyslds==0.0.3) (3.0.2) Collecting pybasicbayes Using cached pybasicbayes-0.2.2.tar.gz (212 kB) Collecting pyhsmm Using cached pyhsmm-0.1.7.tar.gz (513 kB) ERROR: Command errored out with exit status 1: command: /Users/kunalmenda/anaconda3/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/setup.py'"'"'; __file__='"'"'/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-pip-egg-info-_ibd7kv_ cwd: /private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/ Complete output (30 lines): Traceback (most recent call last): File "<string>", line 1, in <module> File "/private/var/folders/bd/3_hzrx6n6r75tb67qfy2g5n80000gn/T/pip-install-hlys7x_n/pyhsmm/setup.py", line 76, in <module> urlretrieve(eigenurl, eigentarpath) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 248, in urlretrieve with contextlib.closing(urlopen(url, data)) as fp: File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 223, in urlopen return opener.open(url, data, timeout) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open response = meth(req, response) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response 'http', request, response, code, msg, hdrs) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 564, in error result = self._call_chain(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain result = func(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 756, in http_error_302 return self.parent.open(new, timeout=req.timeout) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 532, in open response = meth(req, response) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 642, in http_response 'http', request, response, code, msg, hdrs) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 570, in error return self._call_chain(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 504, in _call_chain result = func(*args) File "/Users/kunalmenda/anaconda3/lib/python3.6/urllib/request.py", line 650, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found Downloading Eigen... ---------------------------------------- ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or unsubscribe.