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Unable to install gpu_tools() #25

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XareniGalindo opened this issue Nov 10, 2020 · 0 comments
Open

Unable to install gpu_tools() #25

XareniGalindo opened this issue Nov 10, 2020 · 0 comments

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@XareniGalindo
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I am trying to develop a 3D StarDist model using the Jupyter notebook however I realized my process is running in the CPU instead of the GPU making my the training process run forever. I realized I did not have gup_tools() installed but so far I have not been able to install it. I already try to install it using pip and the developmental version, also I try the troubleshooting suggestions downloading they suggested in the GitHub gputools website (I am not sure if I did this part correctly). Can you help me with what else I can do to run my process in my GPU?

In this case, I am running 3D StarDist without the augmentation process in order to save time during the training but I do not know if this is affecting the speed of the process. I am using the next configuration

conf = Config3D (
rays = rays,
grid = grid,
anisotropy = anisotropy,
use_gpu = use_gpu,
n_channel_in = n_channel,
# adjust for your data below (make patch size as large as possible)
train_patch_size = (48,96,96),
train_epochs = 200,
train_batch_size = 2,
)

My images are 2 fluorescence stacks of 85 images of size 340x310 pixels plus 2 of the demo images.

Thank you in advance.

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