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Add support for multiple observations #26

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Add support for multiple observations #26

wants to merge 59 commits into from

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sosuts
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@sosuts sosuts commented Jul 15, 2020 •
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This adds a support for ;

  1. multiple observations with same length
  2. multiple observations with different(random) length

ToDo lsit:

  • Modify docstring
  • Fix messages.jl for multivariate model with different length
  • Fix update_B! for multivariate model with different length
  • Add proper tests for fixed length
  • Add proper tests for different length
  • Add sample notebook
  • Fix conflicts of previous integration.jl
  • Fix conflicts of previous unit.jl

Ideas:

  • Record the transition of parameters in EMhistory

sosuts added 30 commits June 12, 2020 15:11
@sosuts
Add rand for multiple observations
827d5a9
@sosuts
Add rand for mutivariate distributions
5728ebc
@sosuts
Add support for multiple observations to messages
a011507
@sosuts
Fix wrong argument of rand
9bfec80
@sosuts
Reduce argument of message functions
7846548
@sosuts
Add supprot for N=1
532728b
@sosuts
Add support for multi-observations to likelihoods
640c36d
@sosuts
Fix messages
7101115
@sosuts
Add original rand
e8efa1b
@sosuts
Fix rand
77e708b
@sosuts
Add support for ms-sequences to gettransmat
d207047
@sosuts
Change argument to AbstractArray
eaebbcd
@sosuts
Fix messages-log!
fee806a
@sosuts
Add support for ms-sequences
ab1a2fc
@sosuts
Add support for ms-sequences
bfd6ea9
@sosuts
Add support for ms-sequences
1da0b62
@sosuts
Add support for ms-sequences
6471e4d
@sosuts
Add support for ms-sequences
c0dc9f0
@sosuts
Fix \apporx
446a34c
@sosuts
Fix typo
e4870ae
@sosuts
Fix typo
d09cb0c
@sosuts
Remove println
a27cfe6
@sosuts
Fix typo
fba00c9
@sosuts
Fix typo
9799e9c
@sosuts
Fix typo
75e1327
@sosuts
Fix typo
27283ab
@sosuts
Fix update_B!
7657e0a
@sosuts
Fix typo
ca242e3
@sosuts
Add sample notebook for ms-sequences
eb4b637
@sosuts
Fixing for ms-sequences
8198556
@maxmouchet
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I reopen the PR.
Just push new commits to your branch, they will be added automatically to the PR.

@maxmouchet maxmouchet reopened this Jul 16, 2020
@maxmouchet maxmouchet linked an issue Jul 16, 2020 that may be closed by this pull request
Multiple sequence with different length #16
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@maxmouchet maxmouchet added the enhancement New feature or request label Jul 16, 2020
@sosuts
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sosuts commented Jul 18, 2020 •
edited
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Now this branch can pass the new integration.jl.

@maxmouchet maxmouchet mentioned this pull request Jul 28, 2020
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@maxmouchet
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Thanks for the updates !
I'll have a look at the PR next week :)

@maxmouchet maxmouchet self-requested a review August 27, 2020 14:36
maxmouchet added a commit that referenced this pull request Aug 28, 2020
@maxmouchet
Apply JuliaFormatter in preparation of #26
c3417a1
@sosuts sosuts marked this pull request as draft February 22, 2022 13:50
@sosuts sosuts closed this Jun 25, 2022
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Multiple sequence with different length
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@sosuts @maxmouchet