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mismatching parkour dfs vs samplesheets give rise to empty strings (rather then nans) in the df. This can result in the issue below (though not on re-runs ?).
Todo:
harmonize 'empty' in dfs to np.NAN across entire workflow
have a check / issue warnings when samplesheet & parkour are not matching (especially in forward direction).
deal correctly with empties upon multiqc & email creation.
File "/home/pipegrp/src/github.com/maxplanck-ie/dissectBCL/src/dissectBCL/fakeNews.py", line 217, in multiQC_yaml
reqDepth = float(
ValueError: could not convert string to float: ''
mismatching parkour dfs vs samplesheets give rise to empty strings (rather then nans) in the df. This can result in the issue below (though not on re-runs ?).
Todo:
Originally posted by @dkoppstein in #92 (comment)
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