diff --git a/CHANGELOG.md b/CHANGELOG.md index b28330310..d2797457d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,8 +7,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Enhancements & fixes -- [PR #1388](https://github.com/nf-core/rnaseq/pull/1351) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination -- [PR #1186](https://github.com/nf-core/rnaseq/pull/1186) - Bump pipeline version to 3.16.0dev +- [PR #1376](https://github.com/nf-core/rnaseq/pull/1376) - Fix invalid named parameter syntax +- [PR #1386](https://github.com/nf-core/rnaseq/pull/1386) - Bump pipeline version to 3.16.0dev +- [PR #1388](https://github.com/nf-core/rnaseq/pull/1388) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination - [PR #1389](https://github.com/nf-core/rnaseq/pull/1389) - Update animated subway map ### Parameters diff --git a/workflows/rnaseq/main.nf b/workflows/rnaseq/main.nf index 8a85cf845..e58d744b4 100755 --- a/workflows/rnaseq/main.nf +++ b/workflows/rnaseq/main.nf @@ -597,7 +597,7 @@ workflow RNASEQ { ch_strand_comparison = BAM_RSEQC.out.inferexperiment_txt .map { meta, strand_log -> - def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, stranded_threshold = params.stranded_threshold, unstranded_threshold = params.unstranded_threshold) + def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, params.stranded_threshold, params.unstranded_threshold) rseqc_strandedness = rseqc_inferred_strand.inferred_strandedness def status = 'fail'