From 7b6915c40c73e309368cc9bf16f1a6b190da4401 Mon Sep 17 00:00:00 2001 From: Paolo Di Tommaso Date: Fri, 6 Sep 2024 15:37:24 +0200 Subject: [PATCH 1/3] Update main.nf --- workflows/rnaseq/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/rnaseq/main.nf b/workflows/rnaseq/main.nf index 0b702e641..e5756d393 100755 --- a/workflows/rnaseq/main.nf +++ b/workflows/rnaseq/main.nf @@ -611,7 +611,7 @@ workflow RNASEQ { ch_strand_comparison = BAM_RSEQC.out.inferexperiment_txt .map { meta, strand_log -> - def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, stranded_threshold = params.stranded_threshold, unstranded_threshold = params.unstranded_threshold) + def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, params.stranded_threshold, params.unstranded_threshold) rseqc_strandedness = rseqc_inferred_strand.inferred_strandedness def status = 'fail' From 5d20e28c94d7579cf5b3808ff6436ae6b6d5abb3 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 10 Sep 2024 15:39:10 +0100 Subject: [PATCH 2/3] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index e1976f761..89cc402bf 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,6 +6,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## v3.16.0dev - [date] - [PR #1374](https://github.com/nf-core/rnaseq/pull/1374) - Bump pipeline version to 3.16.0dev +- [PR #1376](https://github.com/nf-core/rnaseq/pull/1376) - Fix invalid named parameter syntax ### Credits From 82c833d427c21d9d9e44fa8cc94b8b6c9bfb0785 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Fri, 20 Sep 2024 16:51:51 +0200 Subject: [PATCH 3/3] Apply suggestions from code review --- CHANGELOG.md | 1 - 1 file changed, 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9029fe352..f2b29a63f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,7 +5,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## v3.16.0dev - [date] - ### Enhancements & fixes - [PR #1376](https://github.com/nf-core/rnaseq/pull/1376) - Fix invalid named parameter syntax