diff --git a/CHANGELOG.md b/CHANGELOG.md index fd64f62..ae56c59 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,8 +1,32 @@ # CHANGELOG + +## v1.12.0 (2024-10-29) + +### Bug Fixes + +* fix: correct boolen for remove corners ([`4161e62`](https://github.com/mbari-org/sdcat/commit/4161e62aec5856beea58c9e3b251f58d9dbc93ce)) + +### Chores + +* chore: default to include all detections in cluster ([`0bf446a`](https://github.com/mbari-org/sdcat/commit/0bf446a99eabe071e5056c4fb2486ffa0891219d)) + +### Continuous Integration + +* ci: add yolov5 to build ([`b8c2eba`](https://github.com/mbari-org/sdcat/commit/b8c2ebac0f3d1f4c2208e87a01fe563e509841e4)) + +### Features + +* feat: added --model MBARI/yolov5x6-uavs-oneclass to detection ([`5fcd915`](https://github.com/mbari-org/sdcat/commit/5fcd915f29b223bd85d33e2f1e093c3ced517603)) + + ## v1.11.1 (2024-09-25) -### Ci +### Bug Fixes + +* fix: correct CUDA HDBSCAN fit ([`c6a8db3`](https://github.com/mbari-org/sdcat/commit/c6a8db33e274c356a4c5d8b26a7f380f615fb6e1)) + +### Continuous Integration * ci: disable release ([`cbf6394`](https://github.com/mbari-org/sdcat/commit/cbf63942d760e52ad89ee4c04660ef8e00559c34)) @@ -14,57 +38,64 @@ * ci: slimmer docker add optional imports ([`48ae61a`](https://github.com/mbari-org/sdcat/commit/48ae61acc6eeb9df4235484d13679e7565030db8)) -### Fix - -* fix: correct CUDA HDBSCAN fit ([`c6a8db3`](https://github.com/mbari-org/sdcat/commit/c6a8db33e274c356a4c5d8b26a7f380f615fb6e1)) ## v1.11.0 (2024-09-18) -### Feature +### Features * feat: add to cluster command option --skip-visualization since this takes some time and is not needed for prod ml workflows ([`48d1f19`](https://github.com/mbari-org/sdcat/commit/48d1f1955510ad2269def64dee9e14b96db36c0f)) + ## v1.10.5 (2024-09-13) -### Fix +### Bug Fixes * fix: minor fix to correct debug statement and correct order arg for cluster ([`645e979`](https://github.com/mbari-org/sdcat/commit/645e9790909496e8f3a385174270bb70f069a165)) + ## v1.10.4 (2024-09-05) -### Fix +### Bug Fixes * fix: move last cluster removal to exemplars only ([`96fc5db`](https://github.com/mbari-org/sdcat/commit/96fc5dbf5953bf823b929e1d41958bcfa9978698)) + ## v1.10.3 (2024-09-03) -### Fix +### Bug Fixes * fix: do not load the last cluster in exemplars ([`bbc3a9a`](https://github.com/mbari-org/sdcat/commit/bbc3a9a0fd73c1ef3852f19928c01c983c34d241)) + ## v1.10.2 (2024-08-22) -### Fix +### Bug Fixes * fix: trigger release with changes to __init__.py ([`e275d9c`](https://github.com/mbari-org/sdcat/commit/e275d9cec3094c37d3bca337ebfe2bfb8364b5d1)) + ## v1.10.1 (2024-08-22) -### Chore +### Bug Fixes -* chore: revert changes to author list ([`b7cd5a5`](https://github.com/mbari-org/sdcat/commit/b7cd5a588743e6173e1045d57abd26d8e20ec16f)) +* fix: trigger release with changes to pyproject.toml to update __version__ ([`6b7f641`](https://github.com/mbari-org/sdcat/commit/6b7f641c192846167926d7c7c7920c0680eb128f)) -### Fix +### Chores + +* chore: revert changes to author list ([`b7cd5a5`](https://github.com/mbari-org/sdcat/commit/b7cd5a588743e6173e1045d57abd26d8e20ec16f)) -* fix: trigger release with changes to pyproject.toml to update __version__ ([`6b7f641`](https://github.com/mbari-org/sdcat/commit/6b7f641c192846167926d7c7c7920c0680eb128f)) ## v1.10.0 (2024-08-22) -### Build +### Bug Fixes + +* fix: better handling of testing log write permissions ([`728b145`](https://github.com/mbari-org/sdcat/commit/728b14526b931ee895865b059a129f966b923e4d)) + +### Build System * build: adjust test path ([`83119fb`](https://github.com/mbari-org/sdcat/commit/83119fbbf479a2f09543355b2872a9f58a2f34ce)) -### Chore +### Chores * chore: moved tests to root of project ([`ccf2601`](https://github.com/mbari-org/sdcat/commit/ccf2601eb292591824064b42f8ccd940a2128537)) @@ -72,21 +103,22 @@ * docs: added clustering table, transformer paper, and other minor revisions ([`56b4e17`](https://github.com/mbari-org/sdcat/commit/56b4e170b19d5b2d9c6984ce8c5cc7e1bc370c93)) -### Feature +### Features * feat: added latest 30 and 18k models ([`673a7f6`](https://github.com/mbari-org/sdcat/commit/673a7f64a9b69f45e0edd72e381c8fe3fce01e75)) -### Fix - -* fix: better handling of testing log write permissions ([`728b145`](https://github.com/mbari-org/sdcat/commit/728b14526b931ee895865b059a129f966b923e4d)) - -### Performance +### Performance Improvements * perf: removed color image normalization in preprocessing for SAHI and extract min_std and block_size for more flexible application across projects ([`d9d954a`](https://github.com/mbari-org/sdcat/commit/d9d954a24ceed9431a357340ca7e959a9111d062)) + ## v1.9.4 (2024-08-05) -### Build +### Bug Fixes + +* fix: pass through device correctly for clustering ([`0996b8c`](https://github.com/mbari-org/sdcat/commit/0996b8cfb4adffa0f57276fb9c0b87a97a7fbcb6)) + +### Build System * build: install cuda enabled torch ([`c01259b`](https://github.com/mbari-org/sdcat/commit/c01259b1a7cea197612e446330f9d6f2ea3457ae)) @@ -94,41 +126,41 @@ * docs: changing 2 parameters to ISIIS images ([`417bbf4`](https://github.com/mbari-org/sdcat/commit/417bbf4e4eecbc8a61de2d8b66d3cabfb1604fbc)) -### Fix - -* fix: pass through device correctly for clustering ([`0996b8c`](https://github.com/mbari-org/sdcat/commit/0996b8cfb4adffa0f57276fb9c0b87a97a7fbcb6)) - -### Test +### Testing * test: adjust plankton detections ([`25ce6bd`](https://github.com/mbari-org/sdcat/commit/25ce6bd32836fcd4eb288179e47905f87c255248)) * test: adjust per changing for ISIIS images ([`de1ba65`](https://github.com/mbari-org/sdcat/commit/de1ba65f8dff5c133bac2b03fe6b5a539619824b)) + ## v1.9.3 (2024-07-31) -### Ci +### Bug Fixes -* ci: disable docker build until resolve issue with out of space ([`59e160f`](https://github.com/mbari-org/sdcat/commit/59e160f2a84f7de8e1d7f2f18e155a6a4b3b8402)) +* fix: skip over HDBSCAN for small cluster ([`cbf1ea3`](https://github.com/mbari-org/sdcat/commit/cbf1ea3381aef94a17eb2ae27924df2238c117a9)) -### Fix +### Continuous Integration + +* ci: disable docker build until resolve issue with out of space ([`59e160f`](https://github.com/mbari-org/sdcat/commit/59e160f2a84f7de8e1d7f2f18e155a6a4b3b8402)) -* fix: skip over HDBSCAN for small cluster ([`cbf1ea3`](https://github.com/mbari-org/sdcat/commit/cbf1ea3381aef94a17eb2ae27924df2238c117a9)) ## v1.9.2 (2024-07-31) -### Fix +### Bug Fixes * fix: handle small cluster dataset reduction plot by switching to PCA and reduce build to only linux ([`16ab4de`](https://github.com/mbari-org/sdcat/commit/16ab4ded38b62665007cc5e5b1b6d1eec5865803)) + ## v1.9.1 (2024-07-31) -### Fix +### Bug Fixes * fix: correct handling of single cluster ([`f6ede19`](https://github.com/mbari-org/sdcat/commit/f6ede19b84b5f8808f34efa9fbf8e36479f5c8d8)) + ## v1.9.0 (2024-07-31) -### Ci +### Continuous Integration * ci: switch to entrypoint ([`02d4eb2`](https://github.com/mbari-org/sdcat/commit/02d4eb2aca56acbe22b452b8f690292210a8243e)) @@ -136,13 +168,14 @@ * docs: minor update to intro ([`ec75265`](https://github.com/mbari-org/sdcat/commit/ec7526584df6d8d63c10c75f672151fb5dc91aa3)) -### Feature +### Features * feat: added support for arg --cluster-selection-method eof/leaf to support small clusters which work better with eof ([`6480ac2`](https://github.com/mbari-org/sdcat/commit/6480ac279d1383f2c08691998fb12ca2705bffeb)) + ## v1.8.4 (2024-07-29) -### Performance +### Performance Improvements * perf: migrated to transformers library with batch size of 8, moved some imports to only where needed for some speed-up, and removed unused activation maps. ([`c5fe725`](https://github.com/mbari-org/sdcat/commit/c5fe72523fdfb1eb7b674565e5724686a4ec65d1)) @@ -152,9 +185,14 @@ perf: transformer batching ([`427931e`](https://github.com/mbari-org/sdcat/commit/427931e3f21e744e887489051ca02d1f8f39f894)) + ## v1.8.3 (2024-07-23) -### Ci +### Bug Fixes + +* fix: handle bad image crops (zero length). Fixes #13. ([`c02394c`](https://github.com/mbari-org/sdcat/commit/c02394c88e7f446d4fb1ddaea1581e5922ebf030)) + +### Continuous Integration * ci: switch to PyPi release and skip over large build ([`25d3da3`](https://github.com/mbari-org/sdcat/commit/25d3da3b25c2cf8e534e7fa93a5eeb76f77672f1)) @@ -164,13 +202,14 @@ perf: transformer batching ([`427931e`](https://github.com/mbari-org/sdcat/commi * docs: shorten readme and update workflow to reflect latest ([`152624e`](https://github.com/mbari-org/sdcat/commit/152624e159c5f535ddc49132d719ab2b1452d06b)) -### Fix - -* fix: handle bad image crops (zero length). Fixes #13. ([`c02394c`](https://github.com/mbari-org/sdcat/commit/c02394c88e7f446d4fb1ddaea1581e5922ebf030)) ## v1.8.2 (2024-07-22) -### Ci +### Bug Fixes + +* fix: fixes a bug in handling zero clusters which occasionally happes for very small roi collections. Closes #12. ([`0f69805`](https://github.com/mbari-org/sdcat/commit/0f698052af54af3f44a8ec2faa335e2f66077b5b)) + +### Continuous Integration * ci: slim with two stage docker build, added explicit semantic release steps for clarity, and test pypi for pip install ([`ff2a46c`](https://github.com/mbari-org/sdcat/commit/ff2a46cdc911dae721357ff27793e6f1ef3d8c01)) @@ -180,27 +219,25 @@ perf: transformer batching ([`427931e`](https://github.com/mbari-org/sdcat/commi * docs: more detail on detection and model table ([`981beb2`](https://github.com/mbari-org/sdcat/commit/981beb2252dec546873cdbf136a6d24a1f2e6c4b)) -### Fix - -* fix: fixes a bug in handling zero clusters which occasionally happes for very small roi collections. Closes #12. ([`0f69805`](https://github.com/mbari-org/sdcat/commit/0f698052af54af3f44a8ec2faa335e2f66077b5b)) ## v1.8.1 (2024-07-19) -### Ci +### Bug Fixes -* ci: add semantic release action to write to repo ([`66be480`](https://github.com/mbari-org/sdcat/commit/66be480ffe72c45fc330b89757555533bc1d76d1)) +* fix: bump version to 1.8.0 still failing in ci ([`ed405e8`](https://github.com/mbari-org/sdcat/commit/ed405e8b5c892746680e1b2985c0842cb0581668)) -### Fix +### Continuous Integration + +* ci: add semantic release action to write to repo ([`66be480`](https://github.com/mbari-org/sdcat/commit/66be480ffe72c45fc330b89757555533bc1d76d1)) -* fix: bump version to 1.8.0 still failing in ci ([`ed405e8`](https://github.com/mbari-org/sdcat/commit/ed405e8b5c892746680e1b2985c0842cb0581668)) ## v1.8.0 (2024-07-19) -### Build +### Build System * build: slim docker images a tad, switch to generic docker user, and replace with miniconda install for better torch/cuda support ([`782848d`](https://github.com/mbari-org/sdcat/commit/782848d9ac2187b0c298e358ef642943e4e3f88f)) -### Ci +### Continuous Integration * ci: simplified docker build within pypi size limits with pip build and renamed accidentally commited backup file ([`cfcb581`](https://github.com/mbari-org/sdcat/commit/cfcb58187e016287280aa2501732c38ea5d0c518)) @@ -210,7 +247,7 @@ perf: transformer batching ([`427931e`](https://github.com/mbari-org/sdcat/commi * ci: add pip package called sdcat with poetry build and other minor corrections in comments ([`dbe494a`](https://github.com/mbari-org/sdcat/commit/dbe494a2112de76839ec37b079e5507908cab1ba)) -### Feature +### Features * feat: auto default logs for different use cases: testing, local dev, and to /tmp on permission failure ([`0c57d45`](https://github.com/mbari-org/sdcat/commit/0c57d4552b90875796a11c1e2899a07c14f1bf53)) @@ -220,39 +257,41 @@ perf: transformer batching ([`427931e`](https://github.com/mbari-org/sdcat/commi ci: add pip package called sdcat with poetry build and other minor co… ([`e220587`](https://github.com/mbari-org/sdcat/commit/e2205871a7fdafc2ca9dd2d769f6d43a73930c1d)) + ## v1.7.0 (2024-07-10) -### Build +### Build System * build: removed unused imports and bump torch to python3.11 compatible and ([`57c6c2b`](https://github.com/mbari-org/sdcat/commit/57c6c2b4232730ffec878b5c3c75491f1ff42c87)) * build: fix docker build ([`0d7ab83`](https://github.com/mbari-org/sdcat/commit/0d7ab83fc57d331fc58dabb8eb8291790b22bc3e)) -### Ci +### Continuous Integration * ci: remove arm cuda build ([`131d3bd`](https://github.com/mbari-org/sdcat/commit/131d3bdb69ddbaeaa88e38580e215f13fdb44284)) -### Feature +### Features * feat: added tsne as an option, defaulted to false as it is generating too many clusters ([`8f974f3`](https://github.com/mbari-org/sdcat/commit/8f974f346b1ab1d1d1c0d16cad21494f8f5f17c7)) + ## v1.6.0 (2024-06-26) -### Build +### Build System * build: add sys path for convenience ([`d668246`](https://github.com/mbari-org/sdcat/commit/d668246fa3b6591723504d9dc26fbe9d58acc24f)) -### Chore +### Chores * chore: updated with links visible in dockerhub ([`53c91b0`](https://github.com/mbari-org/sdcat/commit/53c91b077d3c195844402271861c340fc504582f)) -### Ci +### Continuous Integration * ci: fix release version from tag ([`5d083df`](https://github.com/mbari-org/sdcat/commit/5d083df54902dba4abb91400732ccd82715fdd5a)) * ci: remove pass through of version to dockerhub ([`a43cba7`](https://github.com/mbari-org/sdcat/commit/a43cba7ac1c9599fa48230e0bc8789b49bd3f0cd)) -* ci: correct order of tags in build and reduce dockerhub short description to < 100 ([`86bedcf`](https://github.com/mbari-org/sdcat/commit/86bedcff3f3dd4afc8675a6dcc99430f37b8ed36)) +* ci: correct order of tags in build and reduce dockerhub short description to < 100 ([`86bedcf`](https://github.com/mbari-org/sdcat/commit/86bedcff3f3dd4afc8675a6dcc99430f37b8ed36)) * ci: correct order of tags in build ([`86f100c`](https://github.com/mbari-org/sdcat/commit/86f100c2f5f213efeba6efad0415b7824d726097)) @@ -278,7 +317,7 @@ ci: add pip package called sdcat with poetry build and other minor co… ([`e220 * docs: updated workflow diagram to reflect tSNE ([`f1cecf8`](https://github.com/mbari-org/sdcat/commit/f1cecf866fe7e9b41e71dfb198910ef44a30bc65)) -### Feature +### Features * feat: added export of the examplars, handle small clustering input by bypassing tSNE which fails, and make dino_vits8 the default ([`2306316`](https://github.com/mbari-org/sdcat/commit/2306316f4218244c8fc340261140de9d4af0dc8b)) @@ -288,6 +327,7 @@ ci: add pip package called sdcat with poetry build and other minor co… ([`e220 Docker automated builds ([`fd1e359`](https://github.com/mbari-org/sdcat/commit/fd1e359f7b6f21a0a50597d274e6567825afb605)) + ## v1.5.0 (2024-06-03) ### Unknown @@ -296,35 +336,23 @@ Docker automated builds ([`fd1e359`](https://github.com/mbari-org/sdcat/commit/f RoiCluster ([`a9476c2`](https://github.com/mbari-org/sdcat/commit/a9476c20fea7f0c483c9de52fca1359fdd28ba7a)) -* Merge branch 'main' into roicluster ([`bd1696c`](https://github.com/mbari-org/sdcat/commit/bd1696cf9534e3263608b986084f12b765c3432e)) +* Merge branch 'main' into roicluster ([`bd1696c`](https://github.com/mbari-org/sdcat/commit/bd1696cf9534e3263608b986084f12b765c3432e)) -## v1.4.1 (2024-06-03) -### Chore - -* chore: minor change to remove unused import ([`d87b1de`](https://github.com/mbari-org/sdcat/commit/d87b1de2a3b07f02dbfde7611a8a1506d9a027e5)) +## v1.4.1 (2024-06-03) -### Fix +### Bug Fixes * fix: conditional import of multicore tsne ([`76ec895`](https://github.com/mbari-org/sdcat/commit/76ec89589319664a98c8523312a859aa3475b1c2)) -## v1.4.0 (2024-05-30) - -### Chore - -* chore: remove area for ROI since approximations are probably a bad idea ([`a54d88f`](https://github.com/mbari-org/sdcat/commit/a54d88fa4463c8937288565d06a85f274be0c324)) - -* chore: all options with dashes instead of underscores ([`8dbc5ad`](https://github.com/mbari-org/sdcat/commit/8dbc5ad6b0145bf56f690779ab5790d537c3d2e7)) - -### Feature +### Chores -* feat: added tsne reduction ([`d0f7647`](https://github.com/mbari-org/sdcat/commit/d0f764735d1f0dc91f8090b92367434724b34376)) +* chore: minor change to remove unused import ([`d87b1de`](https://github.com/mbari-org/sdcat/commit/d87b1de2a3b07f02dbfde7611a8a1506d9a027e5)) -* feat: added square black pad resize for roi ([`473aa34`](https://github.com/mbari-org/sdcat/commit/473aa34c6e5efd02bb9983b55f358d3afea89ed8)) -* feat: initial commit of new option to cluster roi only ([`f08053c`](https://github.com/mbari-org/sdcat/commit/f08053c27d6c7c5750416165ed20a40c542f23cd)) +## v1.4.0 (2024-05-30) -### Fix +### Bug Fixes * fix: check for det columns ([`ff9a29d`](https://github.com/mbari-org/sdcat/commit/ff9a29dbe6c81cee0e0038401b9a99309c2baecd)) @@ -342,11 +370,25 @@ RoiCluster ([`a9476c2`](https://github.com/mbari-org/sdcat/commit/a9476c20fea7f0 * fix: removed unused args for start/end frame ([`f91ac03`](https://github.com/mbari-org/sdcat/commit/f91ac03dcd1a3ff735b982cc2b0647eb8dc32938)) -### Performance +### Chores + +* chore: remove area for ROI since approximations are probably a bad idea ([`a54d88f`](https://github.com/mbari-org/sdcat/commit/a54d88fa4463c8937288565d06a85f274be0c324)) + +* chore: all options with dashes instead of underscores ([`8dbc5ad`](https://github.com/mbari-org/sdcat/commit/8dbc5ad6b0145bf56f690779ab5790d537c3d2e7)) + +### Features + +* feat: added tsne reduction ([`d0f7647`](https://github.com/mbari-org/sdcat/commit/d0f764735d1f0dc91f8090b92367434724b34376)) + +* feat: added square black pad resize for roi ([`473aa34`](https://github.com/mbari-org/sdcat/commit/473aa34c6e5efd02bb9983b55f358d3afea89ed8)) + +* feat: initial commit of new option to cluster roi only ([`f08053c`](https://github.com/mbari-org/sdcat/commit/f08053c27d6c7c5750416165ed20a40c542f23cd)) + +### Performance Improvements * perf: switch to multicore tSNE ([`9ec0ca9`](https://github.com/mbari-org/sdcat/commit/9ec0ca9107f9c9e5a6a8ea90c24f711302b1c392)) -### Refactor +### Refactoring * refactor: minor renaming for clarity ([`6bb998a`](https://github.com/mbari-org/sdcat/commit/6bb998af4245b21eb90195465e382788e612e988)) @@ -356,59 +398,66 @@ RoiCluster ([`a9476c2`](https://github.com/mbari-org/sdcat/commit/a9476c20fea7f0 Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54aefa435a1d1ac2e2027a3)) + ## v1.3.0 (2024-05-01) -### Feature +### Features * feat: added pass through of slicing overlap and postprocess_match_metric ([`f3b14bb`](https://github.com/mbari-org/sdcat/commit/f3b14bbf953a5eb18955339c36279cdabd761374)) -### Test +### Testing * test: adjust detection count per NMS output fix ([`9651c7a`](https://github.com/mbari-org/sdcat/commit/9651c7a4c8166a6fe3894d620b1f42726474d592)) + ## v1.2.2 (2024-05-01) -### Fix +### Bug Fixes * fix: allow for override of detect params with config.ini;correct save NMS output and detect single image ([`4ab8780`](https://github.com/mbari-org/sdcat/commit/4ab878033ac423918c7a1eb1eb2416a435779276)) * fix: more detail on cluster args, allow for override with config.ini, and set CUDA_VISIBLE_DEVICES in case not set ([`40a96ef`](https://github.com/mbari-org/sdcat/commit/40a96efcfd4fd9f7cf2fb8aecb11970d5c227671)) -### Refactor +### Refactoring * refactor: minor refactor of cuda device init ([`0f29e68`](https://github.com/mbari-org/sdcat/commit/0f29e688daac36353eb66e85ecf6a4cdd2d61574)) + ## v1.2.1 (2024-04-29) -### Fix +### Bug Fixes * fix: sorted order needed to make start/end filtering work ([`9caea73`](https://github.com/mbari-org/sdcat/commit/9caea73bc3263077e057886eee2ce2a95e1e139d)) + ## v1.2.0 (2024-04-29) ### Documentation * docs: Erasing some prints in the code ([`622c119`](https://github.com/mbari-org/sdcat/commit/622c1191a9055e06fa2bd818ae5ba407cca607bb)) -### Feature +### Features * feat: added support for specifying start/ending file names to support skipping image blocks ([`f344865`](https://github.com/mbari-org/sdcat/commit/f344865812ede812a4bff7b15fd24f71b0d8c418)) + ## v1.1.0 (2024-04-23) -### Feature +### Features * feat: New features for clustering ([`b74d1b1`](https://github.com/mbari-org/sdcat/commit/b74d1b1e3025db401d996ee49c8e79b9d26c8998)) + ## v1.0.9 (2024-04-22) -### Fix +### Bug Fixes * fix: deleting the os version ([`e63bb73`](https://github.com/mbari-org/sdcat/commit/e63bb738e9d8e6c08b1c9913788182b681b550d6)) + ## v1.0.8 (2024-04-22) -### Fix +### Bug Fixes * fix: Adding .tiff images and vizualization tools with tqdm ([`d0b99e2`](https://github.com/mbari-org/sdcat/commit/d0b99e20e1c1a27eee3ba210d0d6724c4e509a1d)) @@ -416,17 +465,18 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * Including clahe in the commands ([`ea92e2f`](https://github.com/mbari-org/sdcat/commit/ea92e2fde01e646bc3506890a8279eb881fbd3c1)) + ## v1.0.7 (2024-03-11) -### Build +### Bug Fixes -* build: bumped version ([`8ba97a8`](https://github.com/mbari-org/sdcat/commit/8ba97a879c94d643543f8c9ff3fa14edcbc31d73)) +* fix: added missing config.ini default ([`ae8b726`](https://github.com/mbari-org/sdcat/commit/ae8b726fedb88459add154ca4add99948f79cc50)) -### Fix +### Build System -* fix: added missing config.ini default ([`ae8b726`](https://github.com/mbari-org/sdcat/commit/ae8b726fedb88459add154ca4add99948f79cc50)) +* build: bumped version ([`8ba97a8`](https://github.com/mbari-org/sdcat/commit/8ba97a879c94d643543f8c9ff3fa14edcbc31d73)) -### Test +### Testing * test: revised PYTHONPATH and switch to codfish semantic release ([`8eb6d42`](https://github.com/mbari-org/sdcat/commit/8eb6d420b906331baf983b639926d74281189ac5)) @@ -434,13 +484,18 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * Testing #2 ([`0d8b2f4`](https://github.com/mbari-org/sdcat/commit/0d8b2f49fecee4370d5d74dfb74171216591f5e7)) + ## v1.0.6 (2024-03-05) -### Build +### Bug Fixes + +* fix: correct some bugs calling libaries ([`d69171b`](https://github.com/mbari-org/sdcat/commit/d69171ba9b9caafa218439df810f9b73ace99023)) + +### Build System * build: bumped version ([`404036b`](https://github.com/mbari-org/sdcat/commit/404036bc673cf541c7f7e45d96d8bbd13a1399b6)) -### Chore +### Chores * chore(release): 1.0.6 [skip ci] @@ -450,17 +505,18 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * correct some bugs calling libaries ([d69171b](https://github.com/mbari-org/sdcat/commit/d69171ba9b9caafa218439df810f9b73ace99023)) ([`ff2c3bd`](https://github.com/mbari-org/sdcat/commit/ff2c3bdf286f2bd6442c737cca825704c81a9779)) -### Fix - -* fix: correct some bugs calling libaries ([`d69171b`](https://github.com/mbari-org/sdcat/commit/d69171ba9b9caafa218439df810f9b73ace99023)) ## v1.0.5 (2024-03-05) -### Build +### Bug Fixes + +* fix: correct some bugs calling libaries ([`0668bda`](https://github.com/mbari-org/sdcat/commit/0668bda21986e6a291f89e0c4a67305d223047ad)) + +### Build System * build: bumped version ([`b7a6740`](https://github.com/mbari-org/sdcat/commit/b7a674041376a38c19ca58436d089312342df8f0)) -### Chore +### Chores * chore(release): 1.0.5 [skip ci] @@ -470,21 +526,22 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * correct some bugs calling libaries ([0668bda](https://github.com/mbari-org/sdcat/commit/0668bda21986e6a291f89e0c4a67305d223047ad)) ([`1258290`](https://github.com/mbari-org/sdcat/commit/12582901b051fb6407b90add813cc9ae7bb82e94)) -### Fix - -* fix: correct some bugs calling libaries ([`0668bda`](https://github.com/mbari-org/sdcat/commit/0668bda21986e6a291f89e0c4a67305d223047ad)) - ### Unknown * Fixing dependencies ([`f069f0d`](https://github.com/mbari-org/sdcat/commit/f069f0dbca3896d98b8c0d01417ce0743365c31f)) + ## v1.0.4 (2024-03-05) -### Build +### Bug Fixes + +* fix: correct more imports ([`107a470`](https://github.com/mbari-org/sdcat/commit/107a470a12abaac020a1bcb7e9749581e882eea8)) + +### Build System * build: bumped version ([`f1c17d3`](https://github.com/mbari-org/sdcat/commit/f1c17d37b1efecedcd01e1ecef55e9e73e8e96da)) -### Chore +### Chores * chore(release): 1.0.4 [skip ci] @@ -494,19 +551,20 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * correct more imports ([107a470](https://github.com/mbari-org/sdcat/commit/107a470a12abaac020a1bcb7e9749581e882eea8)) ([`5e76d32`](https://github.com/mbari-org/sdcat/commit/5e76d32af346cb01b2b7e5c5972923c1b6b4b5bc)) -### Fix - -* fix: correct more imports ([`107a470`](https://github.com/mbari-org/sdcat/commit/107a470a12abaac020a1bcb7e9749581e882eea8)) ## v1.0.3 (2024-03-05) -### Build +### Bug Fixes + +* fix: correct import paths ([`6ca36e1`](https://github.com/mbari-org/sdcat/commit/6ca36e13a321cf8a4460a2598cf8f1e6cf73c2c3)) + +### Build System * build: minor rev to pytest to try to fix PYTHONPATH ([`ed5dec7`](https://github.com/mbari-org/sdcat/commit/ed5dec79fd4d973d654a1b06e5ebe6f242e8aa02)) * build: bumped version ([`af998f4`](https://github.com/mbari-org/sdcat/commit/af998f4bc730660a537c7d3ba818b10585771e27)) -### Chore +### Chores * chore(release): 1.0.3 [skip ci] @@ -526,11 +584,7 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * docs: added sahi example and constrain python to 3.9-3.11 ([`240d630`](https://github.com/mbari-org/sdcat/commit/240d6302a393ef89b7202257c16335c3d71c28f8)) -### Fix - -* fix: correct import paths ([`6ca36e1`](https://github.com/mbari-org/sdcat/commit/6ca36e13a321cf8a4460a2598cf8f1e6cf73c2c3)) - -### Test +### Testing * test: add missing PYTHONPATH ([`4371400`](https://github.com/mbari-org/sdcat/commit/437140021ff3295a3142d94f9ada2f400af2c213)) @@ -538,13 +592,20 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * test: fixed path to main and allow pytest to be run manually ([`f586fd4`](https://github.com/mbari-org/sdcat/commit/f586fd4903a8bb9f470047e944308920a955c628)) + ## v1.0.2 (2024-02-17) -### Build +### Bug Fixes + +* fix: remove unused arguments ([`ad06613`](https://github.com/mbari-org/sdcat/commit/ad066138a233b0bcb79fda18c50b54da658fe545)) + +* fix: pass through config agnostic flat ([`7b5f940`](https://github.com/mbari-org/sdcat/commit/7b5f940bae4a10591f0c7c14b87f2a60b14d69c2)) + +### Build System * build: bumped version ([`721b1b3`](https://github.com/mbari-org/sdcat/commit/721b1b30599cdde6c285fdded2564c844efdf7e4)) -### Chore +### Chores * chore(release): 1.0.2 [skip ci] @@ -559,19 +620,18 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * docs: added spec removal ref ([`987ad8a`](https://github.com/mbari-org/sdcat/commit/987ad8a2ced3506995b2c0d68920ab4e33194939)) -### Fix -* fix: remove unused arguments ([`ad06613`](https://github.com/mbari-org/sdcat/commit/ad066138a233b0bcb79fda18c50b54da658fe545)) +## v1.0.1 (2024-02-15) -* fix: pass through config agnostic flat ([`7b5f940`](https://github.com/mbari-org/sdcat/commit/7b5f940bae4a10591f0c7c14b87f2a60b14d69c2)) +### Bug Fixes -## v1.0.1 (2024-02-15) +* fix: added missing outer block for sahi pool ([`91f88ef`](https://github.com/mbari-org/sdcat/commit/91f88efdffde043c365b4b8871c4d6eae0e64f25)) -### Build +### Build System * build: bumped version ([`5508b33`](https://github.com/mbari-org/sdcat/commit/5508b337df46bb4387483777e28392d757e0202f)) -### Chore +### Chores * chore(release): 1.0.1 [skip ci] @@ -587,17 +647,14 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * docs: added ref to HDBSCAN paper ([`4a4edbc`](https://github.com/mbari-org/sdcat/commit/4a4edbca2d910dbdf7919716375f896d7bfde3da)) -### Fix - -* fix: added missing outer block for sahi pool ([`91f88ef`](https://github.com/mbari-org/sdcat/commit/91f88efdffde043c365b4b8871c4d6eae0e64f25)) ## v1.0.0 (2024-02-14) -### Build +### Build System * build: added release and pytest ([`1bb6f28`](https://github.com/mbari-org/sdcat/commit/1bb6f28de4c6d017b2e617fe50a82d557675586e)) -### Chore +### Chores * chore(release): 1.0.0 [skip ci] @@ -613,6 +670,6 @@ Tsne ([`48ca9f8`](https://github.com/mbari-org/sdcat/commit/48ca9f82ac9fee2fb54a * docs: added example images and cluster workflow diagram ([`b228480`](https://github.com/mbari-org/sdcat/commit/b228480926cfce24d3e8575c786d1b952e8be256)) -### Feature +### Features * feat: initial commit ([`148f17f`](https://github.com/mbari-org/sdcat/commit/148f17f4a1e5af2a03380de964ff1140052d53b8)) diff --git a/pyproject.toml b/pyproject.toml index 03ec011..d7353af 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "sdcat" -version = "1.11.1" +version = "1.12.0" description = "Sliced Detection and Clustering Analysis Toolkit - Developed by MBARI" authors = [ "Danelle Cline ", diff --git a/sdcat/__init__.py b/sdcat/__init__.py index 29f1617..e4ea5e9 100644 --- a/sdcat/__init__.py +++ b/sdcat/__init__.py @@ -1,2 +1,2 @@ # sdcat/__init__.py -__version__ = "1.11.1" \ No newline at end of file +__version__ = "1.12.0" \ No newline at end of file