v1.8.4

v1.8.4 (2024-07-29)

Performance

• perf: migrated to transformers library with batch size of 8, moved some imports to only where needed for some speed-up, and removed unused activation maps. (c5fe725)

Unknown

• Merge pull request #14 from mbari-org/vitbatch

perf: transformer batching (427931e)

v1.8.3

v1.8.3 (2024-07-23)

Ci

• ci: switch to PyPi release and skip over large build (25d3da3)

Documentation

• docs: fix typo (5506bad)

• docs: shorten readme and update workflow to reflect latest (152624e)

Fix

• fix: handle bad image crops (zero length). Fixes #13. (c02394c)

v1.8.2

v1.8.2 (2024-07-22)

Ci

• ci: slim with two stage docker build, added explicit semantic release steps for clarity, and test pypi for pip install (ff2a46c)

Documentation

• docs: updated cluster to include latest roi (b02464e)

• docs: more detail on detection and model table (981beb2)

Fix

• fix: fixes a bug in handling zero clusters which occasionally happes for very small roi collections. Closes #12. (0f69805)

v1.8.1

v1.8.1 (2024-07-19)

Fix

• fix: bump version to 1.8.0 still failing in ci (ed405e8)

v1.8.0

v1.8.0 (2024-07-19)

Build

• build: slim docker images a tad, switch to generic docker user, and replace with miniconda install for better torch/cuda support (782848d)

Feature

• feat: auto default logs for different use cases: testing, local dev, and to /tmp on permission failure (0c57d45)

v1.7.0

v1.7.0 (2024-07-10)

Build

• build: removed unused imports and bump torch to python3.11 compatible and (57c6c2b)

• build: fix docker build (0d7ab83)

Feature

• feat: added tsne as an option, defaulted to false as it is generating too many clusters (8f974f3)

v1.6.0

v1.6.0 (2024-06-26)

Build

• build: add sys path for convenience (d668246)

Documentation

• docs: minor update to correct log format (6cf6453)

• docs: updated workflow diagram to reflect tSNE (f1cecf8)

Feature

• feat: added export of the examplars, handle small clustering input by bypassing tSNE which fails, and make dino_vits8 the default (2306316)

v1.5.0

1.5.0 (2024-06-03)

Bug Fixes

• added image width/height and fixed multiproc to square (b7e2f21)
• check for det columns (ff9a29d)
• correct PIL image path (c0da6b6)
• image size in int not float needed for resize (cf3ebd3)
• image size in int not float needed for resize (18fc005)
• path to string (977ef32)
• removed unused args for start/end frame (f91ac03)
• roi_dir needs to support lists (3808bf9)

Features

• added square black pad resize for roi (473aa34)
• initial commit of new option to cluster roi only (f08053c)

v1.4.1

1.4.1 (2024-06-03)

Bug Fixes

• conditional import of multicore tsne (76ec895)

v1.4.0

1.4.0 (2024-05-30)

Features

• added tsne reduction (d0f7647)

Performance Improvements

• switch to multicore tSNE (9ec0ca9)