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Hope adding Multi-thread for VirFinder to speed up prediction. #16

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kingtom2016 opened this issue Jul 21, 2022 · 2 comments
Open

Hope adding Multi-thread for VirFinder to speed up prediction. #16

kingtom2016 opened this issue Jul 21, 2022 · 2 comments

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@kingtom2016
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Compared with vibrant, VirFinder is too much slow due to single thread in running VF.pred R function.
@kingtom2016
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Run almost all time on VirFinder in the virus module.....
If it is too hard to optimize it, maybe an option to skip this step is a good idea.

@JotaKas
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JotaKas commented Aug 2, 2022

VirFinder currently only officially supports single core. However, there has been some discussion on implementing it multicore.

I will do some testing in the next few days and let you know.

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@JotaKas @kingtom2016