From 7bc201673db7e4a485093701f53d6524de5228d3 Mon Sep 17 00:00:00 2001
From: Yash Singh <saiansh2525@gmail.com>
Date: Sat, 23 Mar 2024 12:06:29 -0700
Subject: [PATCH] fix: patch lodash to not use Function calls

---
 package.json                    |  3 ++-
 patches/cytoscape@3.28.1.patch  | 36 +++++++++++++++++++++++++++++++++
 patches/lodash-es@4.17.21.patch | 28 +++++++++++++++++++++++++
 pnpm-lock.yaml                  | 27 ++++++++++++++-----------
 4 files changed, 81 insertions(+), 13 deletions(-)
 create mode 100644 patches/lodash-es@4.17.21.patch

diff --git a/package.json b/package.json
index 48e92bc238..e89548e56c 100644
--- a/package.json
+++ b/package.json
@@ -131,7 +131,8 @@
   },
   "pnpm": {
     "patchedDependencies": {
-      "cytoscape@3.28.1": "patches/cytoscape@3.28.1.patch"
+      "cytoscape@3.28.1": "patches/cytoscape@3.28.1.patch",
+      "lodash-es@4.17.21": "patches/lodash-es@4.17.21.patch"
     }
   }
 }
diff --git a/patches/cytoscape@3.28.1.patch b/patches/cytoscape@3.28.1.patch
index d92163a318..9bf2cd99a2 100644
--- a/patches/cytoscape@3.28.1.patch
+++ b/patches/cytoscape@3.28.1.patch
@@ -1,3 +1,39 @@
+diff --git a/dist/cytoscape.esm.min.js b/dist/cytoscape.esm.min.js
+index 0da189e8c4d9d781ca52a44ed8e431f423a840e1..3f6826f39d8627076032848b4aa76a4281c47069 100644
+--- a/dist/cytoscape.esm.min.js
++++ b/dist/cytoscape.esm.min.js
+@@ -1,4 +1,4 @@
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+ /*!
+ Embeddable Minimum Strictly-Compliant Promises/A+ 1.1.1 Thenable
+ Copyright (c) 2013-2014 Ralf S. Engelschall (http://engelschall.com)
+diff --git a/dist/cytoscape.min.js b/dist/cytoscape.min.js
+index 3345d86ebcdb3cd5617ae775b5a6e7fdce6b5b04..7060d2081e5d9b02dc3f82d7758def9c4e776bc7 100644
+--- a/dist/cytoscape.min.js
++++ b/dist/cytoscape.min.js
+@@ -20,7 +20,7 @@
+  * SOFTWARE.
+  */
+ 
+-!function(e,t){"object"==typeof exports&&"undefined"!=typeof module?module.exports=t():"function"==typeof define&&define.amd?define(t):(e="undefined"!=typeof globalThis?globalThis:e||self).cytoscape=t()}(this,(function(){"use strict";function e(t){return(e="function"==typeof Symbol&&"symbol"==typeof Symbol.iterator?function(e){return typeof e}:function(e){return e&&"function"==typeof Symbol&&e.constructor===Symbol&&e!==Symbol.prototype?"symbol":typeof e})(t)}function t(e,t){if(!(e instanceof t))throw new TypeError("Cannot call a class as a function")}function n(e,t){for(var n=0;n<t.length;n++){var r=t[n];r.enumerable=r.enumerable||!1,r.configurable=!0,"value"in r&&(r.writable=!0),Object.defineProperty(e,r.key,r)}}function r(e,t,r){return t&&n(e.prototype,t),r&&n(e,r),Object.defineProperty(e,"prototype",{writable:!1}),e}function i(e,t,n){return t in e?Object.defineProperty(e,t,{value:n,enumerable:!0,configurable:!0,writable:!0}):e[t]=n,e}function a(e,t){return 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v=!0,y=0;v&&y<s.maxIterations;)v=!1,jn(t,o,n,i,s),qn(n,r,t,o,s),On(n,r,s.sensitivityThreshold)||(v=!0),y++;return{clusters:function(e,t,n,r){for(var i,a,o=new Array(n.k),s=0;s<o.length;s++)o[s]=[];for(var l=0;l<t.length;l++){i=-1/0,a=-1;for(var u=0;u<t[0].length;u++)t[l][u]>i&&(i=t[l][u],a=u);o[a].push(e[l])}for(var c=0;c<o.length;c++)o[c]=r.collection(o[c]);return o}(o,n,s,a),degreeOfMembership:n}},Xn={kMeans:function(t){var n,r=this.cy(),i=this.nodes(),a=null,o=Nn(t),s=new Array(o.k),l={};o.testMode?"number"==typeof o.testCentroids?(o.testCentroids,n=In(i,o.k,o.attributes)):n="object"===e(o.testCentroids)?o.testCentroids:In(i,o.k,o.attributes):n=In(i,o.k,o.attributes);for(var u,c,d,h=!0,p=0;h&&p<o.maxIterations;){for(var f=0;f<i.length;f++)l[(a=i[f]).id()]=Ln(a,n,o.distance,o.attributes,"kMeans");h=!1;for(var g=0;g<o.k;g++){var v=An(g,i,l);if(0!==v.length){for(var y=o.attributes.length,m=n[g],b=new Array(y),x=new Array(y),w=0;w<y;w++){x[w]=0;for(var E=0;E<v.length;E++)a=v[E],x[w]+=o.attributes[w](a);b[w]=x[w]/v.length,u=b[w],c=m[w],d=o.sensitivityThreshold,Math.abs(c-u)<=d||(h=!0)}n[g]=b,s[g]=r.collection(v)}}p++}return s},kMedoids:function(t){var n,r,i=this.cy(),a=this.nodes(),o=null,s=Nn(t),l=new Array(s.k),u={},c=new Array(s.k);s.testMode?"number"==typeof s.testCentroids||(n="object"===e(s.testCentroids)?s.testCentroids:Vn(a,s.k)):n=Vn(a,s.k);for(var d=!0,h=0;d&&h<s.maxIterations;){for(var p=0;p<a.length;p++)u[(o=a[p]).id()]=Ln(o,n,s.distance,s.attributes,"kMedoids");d=!1;for(var f=0;f<n.length;f++){var g=An(f,a,u);if(0!==g.length){c[f]=Fn(n[f],g,s.attributes);for(var v=0;v<g.length;v++)(r=Fn(g[v],g,s.attributes))<c[f]&&(c[f]=r,n[f]=g[v],d=!0);l[f]=i.collection(g)}}h++}return l},fuzzyCMeans:Yn,fcm:Yn},Wn=Xe({distance:"euclidean",linkage:"min",mode:"threshold",threshold:1/0,addDendrogram:!1,dendrogramDepth:0,attributes:[]}),Hn={single:"min",complete:"max"},Kn=function(e,t,n,r,i){for(var a,o=0,s=1/0,l=i.attributes,u=function(e,t){return Mn(i.distance,l.length,(function(t){return l[t](e)}),(function(e){return l[e](t)}),e,t)},c=0;c<e.length;c++){var d=e[c].key,h=n[d][r[d]];h<s&&(o=d,s=h)}if("threshold"===i.mode&&s>=i.threshold||"dendrogram"===i.mode&&1===e.length)return!1;var p,f=t[o],g=t[r[o]];p="dendrogram"===i.mode?{left:f,right:g,key:f.key}:{value:f.value.concat(g.value),key:f.key},e[f.index]=p,e.splice(g.index,1),t[f.key]=p;for(var v=0;v<e.length;v++){var y=e[v];f.key===y.key?a=1/0:"min"===i.linkage?(a=n[f.key][y.key],n[f.key][y.key]>n[g.key][y.key]&&(a=n[g.key][y.key])):"max"===i.linkage?(a=n[f.key][y.key],n[f.key][y.key]<n[g.key][y.key]&&(a=n[g.key][y.key])):a="mean"===i.linkage?(n[f.key][y.key]*f.size+n[g.key][y.key]*g.size)/(f.size+g.size):"dendrogram"===i.mode?u(y.value,f.value):u(y.value[0],f.value[0]),n[f.key][y.key]=n[y.key][f.key]=a}for(var m=0;m<e.length;m++){var b=e[m].key;if(r[b]===f.key||r[b]===g.key){for(var x=b,w=0;w<e.length;w++){var E=e[w].key;n[b][E]<n[b][x]&&(x=E)}r[b]=x}e[m].index=m}return f.key=g.key=f.index=g.index=null,!0},Gn=function e(t,n,r){t&&(t.value?n.push(t.value):(t.left&&e(t.left,n),t.right&&e(t.right,n)))},Un=function(e){for(var t=this.cy(),n=this.nodes(),r=function(e){var t=Wn(e),n=Hn[t.linkage];return null!=n&&(t.linkage=n),t}(e),i=r.attributes,a=function(e,t){return Mn(r.distance,i.length,(function(t){return i[t](e)}),(function(e){return i[e](t)}),e,t)},o=[],s=[],l=[],u=[],c=0;c<n.length;c++){var d={value:"dendrogram"===r.mode?n[c]:[n[c]],key:c,index:c};o[c]=d,u[c]=d,s[c]=[],l[c]=0}for(var h=0;h<o.length;h++)for(var p=0;p<=h;p++){var f=void 0;f="dendrogram"===r.mode?h===p?1/0:a(o[h].value,o[p].value):h===p?1/0:a(o[h].value[0],o[p].value[0]),s[h][p]=f,s[p][h]=f,f<s[h][l[h]]&&(l[h]=p)}for(var g,v=Kn(o,u,s,l,r);v;)v=Kn(o,u,s,l,r);return"dendrogram"===r.mode?(g=function e(t,n,r){if(!t)return[];var i=[],a=[],o=[];return 0===n?(t.left&&Gn(t.left,i),t.right&&Gn(t.right,a),o=i.concat(a),[r.collection(o)]):1===n?t.value?[r.collection(t.value)]:(t.left&&Gn(t.left,i),t.right&&Gn(t.right,a),[r.collection(i),r.collection(a)]):t.value?[r.collection(t.value)]:(t.left&&(i=e(t.left,n-1,r)),t.right&&(a=e(t.right,n-1,r)),i.concat(a))}(o[0],r.dendrogramDepth,t),r.addDendrogram&&function e(t,n){if(!t)return"";if(t.left&&t.right){var r=e(t.left,n),i=e(t.right,n),a=n.add({group:"nodes",data:{id:r+","+i}});return n.add({group:"edges",data:{source:r,target:a.id()}}),n.add({group:"edges",data:{source:i,target:a.id()}}),a.id()}return t.value?t.value.id():void 0}(o[0],t)):(g=new Array(o.length),o.forEach((function(e,n){e.key=e.index=null,g[n]=t.collection(e.value)}))),g},Zn={hierarchicalClustering:Un,hca:Un},$n=Xe({distance:"euclidean",preference:"median",damping:.8,maxIterations:1e3,minIterations:100,attributes:[]}),Qn=function(e,t,n,r){var i=function(e,t){return r[t](e)};return-Mn(e,r.length,(function(e){return i(t,e)}),(function(e){return i(n,e)}),t,n)},Jn=function(e,t){return"median"===t?function(e){var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:e.length,r=!(arguments.length>3&&void 0!==arguments[3])||arguments[3],i=!(arguments.length>4&&void 0!==arguments[4])||arguments[4],a=!(arguments.length>5&&void 0!==arguments[5])||arguments[5];r?e=e.slice(t,n):(n<e.length&&e.splice(n,e.length-n),t>0&&e.splice(0,t));for(var o=0,s=e.length-1;s>=0;s--){var l=e[s];a?isFinite(l)||(e[s]=-1/0,o++):e.splice(s,1)}i&&e.sort((function(e,t){return e-t}));var u=e.length,c=Math.floor(u/2);return u%2!=0?e[c+1+o]:(e[c-1+o]+e[c+o])/2}(e):"mean"===t?function(e){for(var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:e.length,r=0,i=0,a=t;a<n;a++){var o=e[a];isFinite(o)&&(r+=o,i++)}return r/i}(e):"min"===t?function(e){for(var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:e.length,r=1/0,i=t;i<n;i++){var a=e[i];isFinite(a)&&(r=Math.min(a,r))}return r}(e):"max"===t?function(e){for(var t=arguments.length>1&&void 0!==arguments[1]?arguments[1]:0,n=arguments.length>2&&void 0!==arguments[2]?arguments[2]:e.length,r=-1/0,i=t;i<n;i++){var a=e[i];isFinite(a)&&(r=Math.max(a,r))}return r}(e):t},er=function(e,t,n){for(var r=[],i=0;i<e;i++){for(var a=-1,o=-1/0,s=0;s<n.length;s++){var l=n[s];t[i*e+l]>o&&(a=l,o=t[i*e+l])}a>0&&r.push(a)}for(var u=0;u<n.length;u++)r[n[u]]=n[u];return r},tr=function(e){for(var t,n,r,i,a,o,s=this.cy(),l=this.nodes(),u=function(e){var t=e.damping,n=e.preference;.5<=t&&t<1||Oe("Damping must range on [0.5, 1).  Got: ".concat(t));var r=["median","mean","min","max"];return r.some((function(e){return e===n}))||m(n)||Oe("Preference must be one of [".concat(r.map((function(e){return"'".concat(e,"'")})).join(", "),"] or a number.  Got: ").concat(n)),$n(e)}(e),c={},d=0;d<l.length;d++)c[l[d].id()]=d;n=(t=l.length)*t,r=new Array(n);for(var h=0;h<n;h++)r[h]=-1/0;for(var p=0;p<t;p++)for(var f=0;f<t;f++)p!==f&&(r[p*t+f]=Qn(u.distance,l[p],l[f],u.attributes));i=Jn(r,u.preference);for(var g=0;g<t;g++)r[g*t+g]=i;a=new Array(n);for(var v=0;v<n;v++)a[v]=0;o=new Array(n);for(var y=0;y<n;y++)o[y]=0;for(var b=new Array(t),x=new Array(t),w=new Array(t),E=0;E<t;E++)b[E]=0,x[E]=0,w[E]=0;for(var k,C=new Array(t*u.minIterations),S=0;S<C.length;S++)C[S]=0;for(k=0;k<u.maxIterations;k++){for(var P=0;P<t;P++){for(var D=-1/0,T=-1/0,_=-1,M=0,B=0;B<t;B++)b[B]=a[P*t+B],(M=o[P*t+B]+r[P*t+B])>=D?(T=D,D=M,_=B):M>T&&(T=M);for(var N=0;N<t;N++)a[P*t+N]=(1-u.damping)*(r[P*t+N]-D)+u.damping*b[N];a[P*t+_]=(1-u.damping)*(r[P*t+_]-T)+u.damping*b[_]}for(var z=0;z<t;z++){for(var I=0,L=0;L<t;L++)b[L]=o[L*t+z],x[L]=Math.max(0,a[L*t+z]),I+=x[L];I-=x[z],x[z]=a[z*t+z],I+=x[z];for(var A=0;A<t;A++)o[A*t+z]=(1-u.damping)*Math.min(0,I-x[A])+u.damping*b[A];o[z*t+z]=(1-u.damping)*(I-x[z])+u.damping*b[z]}for(var O=0,R=0;R<t;R++){var V=o[R*t+R]+a[R*t+R]>0?1:0;C[k%u.minIterations*t+R]=V,O+=V}if(O>0&&(k>=u.minIterations-1||k==u.maxIterations-1)){for(var F=0,j=0;j<t;j++){w[j]=0;for(var q=0;q<u.minIterations;q++)w[j]+=C[q*t+j];0!==w[j]&&w[j]!==u.minIterations||F++}if(F===t)break}}for(var Y=function(e,t,n){for(var r=[],i=0;i<e;i++)t[i*e+i]+n[i*e+i]>0&&r.push(i);return r}(t,a,o),X=function(e,t,n){for(var r=er(e,t,n),i=0;i<n.length;i++){for(var a=[],o=0;o<r.length;o++)r[o]===n[i]&&a.push(o);for(var s=-1,l=-1/0,u=0;u<a.length;u++){for(var c=0,d=0;d<a.length;d++)c+=t[a[d]*e+a[u]];c>l&&(s=u,l=c)}n[i]=a[s]}return r=er(e,t,n)}(t,r,Y),W={},H=0;H<Y.length;H++)W[Y[H]]=[];for(var K=0;K<l.length;K++){var G=X[c[l[K].id()]];null!=G&&W[G].push(l[K])}for(var U=new Array(Y.length),Z=0;Z<Y.length;Z++)U[Z]=s.collection(W[Y[Z]]);return U},nr={affinityPropagation:tr,ap:tr},rr=Xe({root:void 0,directed:!1}),ir=function(){var e=this,t={},n=0,r=0,i=[],a=[],o={},s=function s(l,u,c){l===c&&(r+=1),t[u]={id:n,low:n++,cutVertex:!1};var d,h,p,f,g=e.getElementById(u).connectedEdges().intersection(e);0===g.size()?i.push(e.spawn(e.getElementById(u))):g.forEach((function(n){d=n.source().id(),h=n.target().id(),(p=d===u?h:d)!==c&&(f=n.id(),o[f]||(o[f]=!0,a.push({x:u,y:p,edge:n})),p in t?t[u].low=Math.min(t[u].low,t[p].id):(s(l,p,u),t[u].low=Math.min(t[u].low,t[p].low),t[u].id<=t[p].low&&(t[u].cutVertex=!0,function(n,r){for(var o=a.length-1,s=[],l=e.spawn();a[o].x!=n||a[o].y!=r;)s.push(a.pop().edge),o--;s.push(a.pop().edge),s.forEach((function(n){var r=n.connectedNodes().intersection(e);l.merge(n),r.forEach((function(n){var r=n.id(),i=n.connectedEdges().intersection(e);l.merge(n),t[r].cutVertex?l.merge(i.filter((function(e){return e.isLoop()}))):l.merge(i)}))})),i.push(l)}(u,p))))}))};e.forEach((function(e){if(e.isNode()){var n=e.id();n in t||(r=0,s(n,n),t[n].cutVertex=r>1)}}));var l=Object.keys(t).filter((function(e){return t[e].cutVertex})).map((function(t){return e.getElementById(t)}));return{cut:e.spawn(l),components:i}},ar=function(){var e=this,t={},n=0,r=[],i=[],a=e.spawn(e);return e.forEach((function(o){if(o.isNode()){var s=o.id();s in t||function o(s){if(i.push(s),t[s]={index:n,low:n++,explored:!1},e.getElementById(s).connectedEdges().intersection(e).forEach((function(e){var n=e.target().id();n!==s&&(n in t||o(n),t[n].explored||(t[s].low=Math.min(t[s].low,t[n].low)))})),t[s].index===t[s].low){for(var l=e.spawn();;){var u=i.pop();if(l.merge(e.getElementById(u)),t[u].low=t[s].index,t[u].explored=!0,u===s)break}var c=l.edgesWith(l),d=l.merge(c);r.push(d),a=a.difference(d)}}(s)}})),{cut:a,components:r}},or={};[et,rt,it,ot,lt,ct,ft,an,sn,un,dn,wn,Xn,Zn,nr,{hierholzer:function(e){if(!y(e)){var t=arguments;e={root:t[0],directed:t[1]}}var n,r,i,a=rr(e),o=a.root,s=a.directed,l=this,u=!1;o&&(i=f(o)?this.filter(o)[0].id():o[0].id());var c={},d={};s?l.forEach((function(e){var t=e.id();if(e.isNode()){var i=e.indegree(!0),a=e.outdegree(!0),o=i-a,s=a-i;1==o?n?u=!0:n=t:1==s?r?u=!0:r=t:(s>1||o>1)&&(u=!0),c[t]=[],e.outgoers().forEach((function(e){e.isEdge()&&c[t].push(e.id())}))}else d[t]=[void 0,e.target().id()]})):l.forEach((function(e){var t=e.id();e.isNode()?(e.degree(!0)%2&&(n?r?u=!0:r=t:n=t),c[t]=[],e.connectedEdges().forEach((function(e){return c[t].push(e.id())}))):d[t]=[e.source().id(),e.target().id()]}));var h={found:!1,trail:void 0};if(u)return h;if(r&&n)if(s){if(i&&r!=i)return h;i=r}else{if(i&&r!=i&&n!=i)return h;i||(i=r)}else i||(i=l[0].id());var p=function(e){for(var t,n,r,i=e,a=[e];c[i].length;)t=c[i].shift(),n=d[t][0],i!=(r=d[t][1])?(c[r]=c[r].filter((function(e){return e!=t})),i=r):s||i==n||(c[n]=c[n].filter((function(e){return e!=t})),i=n),a.unshift(t),a.unshift(i);return a},g=[],v=[];for(v=p(i);1!=v.length;)0==c[v[0]].length?(g.unshift(l.getElementById(v.shift())),g.unshift(l.getElementById(v.shift()))):v=p(v.shift()).concat(v);for(var m in g.unshift(l.getElementById(v.shift())),c)if(c[m].length)return h;return h.found=!0,h.trail=this.spawn(g,!0),h}},{hopcroftTarjanBiconnected:ir,htbc:ir,htb:ir,hopcroftTarjanBiconnectedComponents:ir},{tarjanStronglyConnected:ar,tsc:ar,tscc:ar,tarjanStronglyConnectedComponents:ar}].forEach((function(e){I(or,e)}));
+ /*!
+   Embeddable Minimum Strictly-Compliant Promises/A+ 1.1.1 Thenable
+   Copyright (c) 2013-2014 Ralf S. Engelschall (http://engelschall.com)
+diff --git a/dist/cytoscape.umd.js b/dist/cytoscape.umd.js
+index 07ddbe0cc5ddbabe4266f96296501578f20b3753..fb9edbe50e9356f78b78ad5c8aa17198732d7a8b 100644
+--- a/dist/cytoscape.umd.js
++++ b/dist/cytoscape.umd.js
+@@ -660,7 +660,7 @@
+   var freeSelf = typeof self == 'object' && self && self.Object === Object && self;
+ 
+   /** Used as a reference to the global object. */
+-  var root = _freeGlobal || freeSelf || Function('return this')();
++  var root = _freeGlobal || freeSelf || window;
+ 
+   var _root = root;
+ 
 diff --git a/package.json b/package.json
 index f2f77fa79c99382b079f4051ed51eafe8d2379c8..0bfddf55394e86f3a386eb7ab681369d410bae07 100644
 --- a/package.json
diff --git a/patches/lodash-es@4.17.21.patch b/patches/lodash-es@4.17.21.patch
new file mode 100644
index 0000000000..ac42ba968a
--- /dev/null
+++ b/patches/lodash-es@4.17.21.patch
@@ -0,0 +1,28 @@
+diff --git a/_root.js b/_root.js
+index 281f81280ec9ea137b644ba60b9f5c6ccede4f88..ceb914c0fa8db7d7064d2a6b79f065ec59c826e9 100644
+--- a/_root.js
++++ b/_root.js
+@@ -3,7 +3,22 @@ import freeGlobal from './_freeGlobal.js';
+ /** Detect free variable `self`. */
+ var freeSelf = typeof self == 'object' && self && self.Object === Object && self;
+ 
++// From https://mathiasbynens.be/notes/globalthis#robust-polyfill
++var root = freeGlobal || freeSelf || null;
++if (root == null) {
++  (function() {
++    if (typeof globalThis === 'object') return;
++    Object.defineProperty(Object.prototype, '__magic__', {
++      get: function() {
++        return this;
++      },
++      configurable: true
++    });
++    root = __magic__;
++    delete Object.prototype.__magic__;  
++  })();
++}
++
+ /** Used as a reference to the global object. */
+-var root = freeGlobal || freeSelf || Function('return this')();
+ 
+ export default root;
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index 7a0e62d60e..8ff863ee7a 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -6,8 +6,11 @@ settings:
 
 patchedDependencies:
   cytoscape@3.28.1:
-    hash: claipxynndhyqyu2csninuoh5e
+    hash: ptwxhyirnys2z5yt6vr2mafuxi
     path: patches/cytoscape@3.28.1.patch
+  lodash-es@4.17.21:
+    hash: 7yahbriyrg2v3fa64fwe6gectm
+    path: patches/lodash-es@4.17.21.patch
 
 importers:
 
@@ -216,7 +219,7 @@ importers:
         version: link:../parser
       cytoscape:
         specifier: ^3.28.1
-        version: 3.28.1(patch_hash=claipxynndhyqyu2csninuoh5e)
+        version: 3.28.1(patch_hash=ptwxhyirnys2z5yt6vr2mafuxi)
       cytoscape-cose-bilkent:
         specifier: ^4.1.0
         version: 4.1.0(cytoscape@3.28.1)
@@ -246,7 +249,7 @@ importers:
         version: 2.1.0
       lodash-es:
         specifier: ^4.17.21
-        version: 4.17.21
+        version: 4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm)
       mdast-util-from-markdown:
         specifier: ^1.3.0
         version: 1.3.1
@@ -2719,13 +2722,13 @@ packages:
     dependencies:
       '@chevrotain/gast': 11.0.3
       '@chevrotain/types': 11.0.3
-      lodash-es: 4.17.21
+      lodash-es: 4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm)
 
   /@chevrotain/gast@11.0.3:
     resolution: {integrity: sha512-+qNfcoNk70PyS/uxmj3li5NiECO+2YKZZQMbmjTqRI3Qchu8Hig/Q9vgkHpI3alNjr7M+a2St5pw5w5F6NL5/Q==}
     dependencies:
       '@chevrotain/types': 11.0.3
-      lodash-es: 4.17.21
+      lodash-es: 4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm)
 
   /@chevrotain/regexp-to-ast@11.0.3:
     resolution: {integrity: sha512-1fMHaBZxLFvWI067AVbGJav1eRY7N8DDvYCTwGBiE/ytKBgP8azTdgyrKyWZ9Mfh09eHWb5PgTSO8wi7U824RA==}
@@ -7542,7 +7545,7 @@ packages:
       chevrotain: ^11.0.0
     dependencies:
       chevrotain: 11.0.3
-      lodash-es: 4.17.21
+      lodash-es: 4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm)
 
   /chevrotain@11.0.3:
     resolution: {integrity: sha512-ci2iJH6LeIkvP9eJW6gpueU8cnZhv85ELY8w8WiFtNjMHA5ad6pQLaJo9mEly/9qUyCpvqX8/POVUTf18/HFdw==}
@@ -7552,7 +7555,7 @@ packages:
       '@chevrotain/regexp-to-ast': 11.0.3
       '@chevrotain/types': 11.0.3
       '@chevrotain/utils': 11.0.3
-      lodash-es: 4.17.21
+      lodash-es: 4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm)
 
   /chokidar@3.6.0:
     resolution: {integrity: sha512-7VT13fmjotKpGipCW9JEQAusEPE+Ei8nl6/g4FBAmIm0GOOLMua9NDDo/DWp0ZAxCr3cPq5ZpBqmPAQgDda2Pw==}
@@ -8332,10 +8335,10 @@ packages:
       cytoscape: ^3.2.0
     dependencies:
       cose-base: 1.0.3
-      cytoscape: 3.28.1(patch_hash=claipxynndhyqyu2csninuoh5e)
+      cytoscape: 3.28.1(patch_hash=ptwxhyirnys2z5yt6vr2mafuxi)
     dev: false
 
-  /cytoscape@3.28.1(patch_hash=claipxynndhyqyu2csninuoh5e):
+  /cytoscape@3.28.1(patch_hash=ptwxhyirnys2z5yt6vr2mafuxi):
     resolution: {integrity: sha512-xyItz4O/4zp9/239wCcH8ZcFuuZooEeF8KHRmzjDfGdXsj3OG9MFSMA0pJE0uX3uCN/ygof6hHf4L7lst+JaDg==}
     engines: {node: '>=0.10'}
     dependencies:
@@ -8627,7 +8630,7 @@ packages:
     resolution: {integrity: sha512-qTCQmEhcynucuaZgY5/+ti3X/rnszKZhEQH/ZdWdtP1tA/y3VoHJzcVrO9pjjJCNpigfscAtoUB5ONcd2wNn0A==}
     dependencies:
       d3: 7.8.5
-      lodash-es: 4.17.21
+      lodash-es: 4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm)
     dev: false
 
   /dargs@7.0.0:
@@ -12425,8 +12428,9 @@ packages:
       p-locate: 6.0.0
     dev: true
 
-  /lodash-es@4.17.21:
+  /lodash-es@4.17.21(patch_hash=7yahbriyrg2v3fa64fwe6gectm):
     resolution: {integrity: sha512-mKnC+QJ9pWVzv+C4/U3rRsHapFfHvQFoFB92e52xeyGMcX6/OlIl78je1u8vePzYZSkkogMPJ2yjxxsb89cxyw==}
+    patched: true
 
   /lodash.camelcase@4.3.0:
     resolution: {integrity: sha512-TwuEnCnxbc3rAvhf/LbG7tJUDzhqXyFnv3dtzLOPgCG/hODL7WFnsbwktkD7yUV0RrreP/l1PALq/YSg6VvjlA==}
@@ -17336,7 +17340,6 @@ packages:
 
   /workbox-google-analytics@7.0.0:
     resolution: {integrity: sha512-MEYM1JTn/qiC3DbpvP2BVhyIH+dV/5BjHk756u9VbwuAhu0QHyKscTnisQuz21lfRpOwiS9z4XdqeVAKol0bzg==}
-    deprecated: It is not compatible with newer versions of GA starting with v4, as long as you are using GAv3 it should be ok, but the package is not longer being maintained
     dependencies:
       workbox-background-sync: 7.0.0
       workbox-core: 7.0.0