From b7ee02e90665319606408394813fcf80fe1176c8 Mon Sep 17 00:00:00 2001
From: rugeli <91452427+rugeli@users.noreply.github.com>
Date: Mon, 6 Nov 2023 22:56:17 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20main=20@=202?=
=?UTF-8?q?c5e04bf6a265f473dcaddd3e58dc00e16833e88=20=F0=9F=9A=80?=
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---
_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html | 2 ++
_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html | 7 +++++--
2 files changed, 7 insertions(+), 2 deletions(-)
diff --git a/_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html b/_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html
index 60c81fac5..c6c17d5f9 100644
--- a/_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html
+++ b/_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html
@@ -144,6 +144,8 @@ Source code for cellpack.autopack.loaders.migrate_v1_to_v2
new_ingredient["representations"] = get_representations(old_ingredient)
if new_ingredient["type"] == INGREDIENT_TYPE.SINGLE_SPHERE:
new_ingredient["radius"] = old_ingredient["radii"][0][0]
+ if "partners" in new_ingredient and not new_ingredient["partners"].get("names"):
+ del new_ingredient["partners"]
return new_ingredient
diff --git a/_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html b/_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html
index 4d7e7b006..0567ff829 100644
--- a/_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html
+++ b/_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html
@@ -47,7 +47,7 @@ Source code for cellpack.autopack.loaders.migrate_v2_to_v2_1
[docs]
def convert_partners(object_data):
partners_list = []
-
if "names" not in "partners":
+
if "names" not in object_data["partners"]:
return partners_list
for index, name in enumerate(object_data["partners"]["names"]):
positions = object_data["partners"]["positions"]
@@ -58,7 +58,10 @@
Source code for cellpack.autopack.loaders.migrate_v2_to_v2_1
binding_probability = 1.0
if "probability_binding" in object_data["partners"]:
binding_probability = object_data["partners"]["probability_binding"]
- if "probability_repelled" in object_data["partners"]:
+ if (
+ "probability_repelled" in object_data["partners"]
+ and object_data["partners"]["probability_repelled"] < 0
+ ):
binding_probability = -object_data["partners"]["probability_repelled"]
partner = {