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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(bisqueParam)
export(cellProportionsPredictions)
export(deconvolution)
export(eset_to_sce)
export(eset_to_se)
export(findmarkersParam)
export(getDeconvolutionExampleData)
export(getDeconvolutionExampleDataBisque)
export(getDeconvolutionExampleDataSCDC)
export(get_celltypes_from_sce)
export(get_csf_reference)
export(get_eset_from_matrix)
export(independentbulkParam)
export(lute)
export(luteSupportedDeconvolutionAlgorithms)
export(new_workflow_table)
export(nnlsParam)
export(parseDeconvolutionPredictionsResults)
export(proportionsVectorsList)
export(randomMarkersVectorsList)
export(randomSingleCellExperiment)
export(referenceFromSingleCellExperiment)
export(referencebasedParam)
export(rmse)
export(rmseTest)
export(sce_to_eset)
export(sce_to_se)
export(se_to_eset)
export(se_to_sce)
export(typemarkers)
export(typemarkersParam)
export(ypb_from_sce)
export(z_matrix_from_sce)
exportClasses(deconvolutionParam)
exportMethods("[[")
exportMethods(deconvolution)
exportMethods(show)
exportMethods(typemarkers)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(BiocGenerics,counts)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,counts)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(dplyr,"%>%")
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(scran,findMarkers)
importFrom(stats,rnbinom)
importFrom(stats,rpois)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
importFrom(stats, median)