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Releases: metrumresearchgroup/bbi

v2.1.0-alpha.4

05 Jan 15:04
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3c38332 bump: config namespacing and add versioning
3fd841e refactor: namespace config so easier to target
e44e27b refactor: adjust default clean lvl to 1
24d6392 add: bbi version to model struct

v2.1.0-alpha.3

05 Jan 03:39
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a37bc5d bump: add model hashing
b7392e3 feat: hash data and store config.json in run subdir
f487865 config: add data path and md5 for provenance tracking and prep for json

v2.1.0-alpha.2

04 Jan 18:54
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Changelog

054ba8a bump: add better nonmem config heuristics
c64dfb0 Fixing home definition during viper set
5475152 Capable of locating and setting up nonmem locations
b20ff3c Updating top-level readme with reference to bbi init
ea2910d Updates to documentation to reference babylon config, nmVersion and bbinit
b83a6e7 Updating to mark the directories as nmqual true since nmqual appears to be in each
223ae90 Updating copied json to only process if files are actually copied
d46ea33 Removing yaml file since we're generating it now
48309b8 Using the nonmem configs for generating commands as well as init command
0254fd2 fixup: more cleanup and add dir specific ignores
03a7bb6 refactor: don't have separate 73 and 74 folders
0ba7e8f fixup: clear out 74 incorrectly checked in test outputs
634eedc fixup: clear out 74 incorrectly checked in test outputs
d134d26 fixup: remove incorrectly checked in old test files

v2.1.0-alpha.1

03 Jan 04:13
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5ae2e06 bump: v2.1.0-alpha.1
8cc8e5c dep: mod tidy
1228f9f Fix/parameter names (#90)
a86ff80 Merge branch 'master' into fix/parameter-names
7ebba57 Feature/running nonmem (#97)
4b19102 Located the section adding the estimated string to the next job r… (#89)
f29da4c Config struct (#96)
6ad4641 Beginning turnstile implementation and getting basics working. Ne… (#91)
8bb8053 Updating to make sure copy and clean levels get applied from viper correctly
7d54231 Updating to marshall down to config and write config yaml to output directory on local execution path
ae849b7 Unmarshalling into custom config struct
149b68d Updating to include reference to order of location loading for the babylon.yaml file
9c372ea Removing old run markdown
fa02ea0 Making sure to use code tags to cleanly separate components from rest of block
3b21fe4 Fixing misalignment issue for code block in markdown
533fd0a Fixing duplicated subcommands block
f2daf26 Restructuring of documentation
8399171 Updating to make sure directory location of models is working correctly
a6a733f Updating SGE path to append run_ to any modelname that begins with an integer
75eefda Updating such that gitignore has the temporary files in it after completion
407607f Udpating to make sure the expansions for the msf files are included in the clean definitions
c22fe21 Updating with flag for babylonBinary to allow overriding location of babylon
6ca2091 Grid executions are working as expected now
5f7d4e6 Separating clean and copy levels
0761c74 fix: support parsing for models with no sigmas
b3ff26f Implemented a save config on work completion option. Saves the viper configs to the model directory
593d90f Avoiding error scenario when the error contains the text for not allowed to run in any queue
5fba605 Successfully managing failures in SGE pathway now. No gaps for channel management
21300e2 Consolidate and generalized large volumes of code. Also removed the cross platform dance
a43d787 Updated to uniformly handle post work messaging and notify what config is loaded (outside of the directory of the directory of the model)
c550607 Centralizing creation of nonmem models and processing only the discrete model file passed by the user. No inferences in file level calculations
ab09804 Updating to parse config at first from home or current dir. During execution if nothing is loaded, we'll try to locate a config where the models are and read it in
a84fdb2 Submitting to grid now
79e7570 Fixing target of SGE command
8e10b3e SGE Implementation
7446eac Renamespaced various commands and created local wrapper for NonmemModel to allow for differing implementations by command
9efdb8b Updating to persistant flags across the run command
04c7d29 More sanity around default setting
3860e70 Moving to purely localized viper configs. Removed some components from load defaults (which will be removed)
fbd1d4f Making reclean default to 0 as well as they're sharing and overlapping a variable
547e8ee Dealt with stuttering on copy up from extrapolated file names
0f3e860 Renaming from local model to something more shareable between nonmem executions
96dce6f Moving to a more platform agnostic mechanism of handling line endings
a066679 More unified approach to file level handling etc
6bbd454 Relocating indication of work completion to cleanup phase
bdd2b53 Fixed mismatch between relative vs absolute paths
c8b3c1c Copy and cleanup are working at cursory glance
3c9ea8d Removing todos that were implemented
bb7c0bf Extrapolating ranges at absolute and relative paths now
1a13b68 Fixed scenario where overwrite would empty the originalPath directory if no outputDir was provided
fdebfed Beginning turnstile implementation and getting basics working. Need to implement cache still.
1350d1c Updating with a test for new function
99e800e refactor: add coloration to summary heuristic issues
1687df9 add: add summary information around heuristic errors
2efa92b refactor: rip out HeuristicStatus elements as overly complex
e9e72f8 refactor: change struct to make shrinkage/cor/cov optional
5787053 fix: fix diagonal indices indexing
2bb8d9c wip: start cleanup to support bayesian and models where parameter structures/names aren't parseable
5313b90 refactor: create default parameter names
84d64f7 Moving to processing template and the overwrite flag. Removed duplicitous flags and cleaned up estimate model
4799726 Updating test to accomodate new planned directory name
1ac0851 Updating to make sure we have a _ before the run indicator
0b94ac4 Located the section adding the estimated string to the next job run
298d110 doc: add some comments around methods

v2.1.0-alpha0.0.2

24 Dec 19:04
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Changelog

7898153 chore: update makefile to release
0db7e51 bump: version
0ce2dc3 Merge branch 'grid_submission' of github.com:metrumresearchgroup/babylon into combined-fixes
149b68d Updating to include reference to order of location loading for the babylon.yaml file
9c372ea Removing old run markdown
fa02ea0 Making sure to use code tags to cleanly separate components from rest of block
3b21fe4 Fixing misalignment issue for code block in markdown
533fd0a Fixing duplicated subcommands block
f2daf26 Restructuring of documentation
8399171 Updating to make sure directory location of models is working correctly
a6a733f Updating SGE path to append run_ to any modelname that begins with an integer

v2.1.0-alpha0.0.1

20 Dec 17:39
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v2.1.0-alpha0.0.1 Pre-release
Pre-release

NOTE: this is a developer-only test release for end-to-end testing, and should be used with care

Changelog

82b26e5 Merge branch 'grid_submission' of github.com:metrumresearchgroup/babylon into combined-fixes
75eefda Updating such that gitignore has the temporary files in it after completion
407607f Udpating to make sure the expansions for the msf files are included in the clean definitions
c22fe21 Updating with flag for babylonBinary to allow overriding location of babylon
6ca2091 Grid executions are working as expected now
5f7d4e6 Separating clean and copy levels
0761c74 fix: support parsing for models with no sigmas
b3ff26f Implemented a save config on work completion option. Saves the viper configs to the model directory
593d90f Avoiding error scenario when the error contains the text for not allowed to run in any queue
5fba605 Successfully managing failures in SGE pathway now. No gaps for channel management
21300e2 Consolidate and generalized large volumes of code. Also removed the cross platform dance
a43d787 Updated to uniformly handle post work messaging and notify what config is loaded (outside of the directory of the directory of the model)
c550607 Centralizing creation of nonmem models and processing only the discrete model file passed by the user. No inferences in file level calculations
ab09804 Updating to parse config at first from home or current dir. During execution if nothing is loaded, we'll try to locate a config where the models are and read it in
a84fdb2 Submitting to grid now
79e7570 Fixing target of SGE command
8e10b3e SGE Implementation
7446eac Renamespaced various commands and created local wrapper for NonmemModel to allow for differing implementations by command
9efdb8b Updating to persistant flags across the run command
04c7d29 More sanity around default setting
3860e70 Moving to purely localized viper configs. Removed some components from load defaults (which will be removed)
fbd1d4f Making reclean default to 0 as well as they're sharing and overlapping a variable
547e8ee Dealt with stuttering on copy up from extrapolated file names
0f3e860 Renaming from local model to something more shareable between nonmem executions
96dce6f Moving to a more platform agnostic mechanism of handling line endings
a066679 More unified approach to file level handling etc
6bbd454 Relocating indication of work completion to cleanup phase
bdd2b53 Fixed mismatch between relative vs absolute paths
c8b3c1c Copy and cleanup are working at cursory glance
3c9ea8d Removing todos that were implemented
bb7c0bf Extrapolating ranges at absolute and relative paths now
1a13b68 Fixed scenario where overwrite would empty the originalPath directory if no outputDir was provided
fdebfed Beginning turnstile implementation and getting basics working. Need to implement cache still.
1350d1c Updating with a test for new function
99e800e refactor: add coloration to summary heuristic issues
1687df9 add: add summary information around heuristic errors
2efa92b refactor: rip out HeuristicStatus elements as overly complex
e9e72f8 refactor: change struct to make shrinkage/cor/cov optional
5787053 fix: fix diagonal indices indexing
2bb8d9c wip: start cleanup to support bayesian and models where parameter structures/names aren't parseable
5313b90 refactor: create default parameter names
84d64f7 Moving to processing template and the overwrite flag. Removed duplicitous flags and cleaned up estimate model
4799726 Updating test to accomodate new planned directory name
1ac0851 Updating to make sure we have a _ before the run indicator
0b94ac4 Located the section adding the estimated string to the next job run
298d110 doc: add some comments around methods
cc5c8ee tag: alpha 3
03cf06f test: refactor table test
9600cf9 refactor: adjust default copy level to 4 so doesn't copy up anything
cb2e6f7 refactor: adjust missing eta in summary table
b904017 Triage/bugfixes (#83)
2f544a2 Release/v2.0.0 (#26)
144932e shrinkage and testing refactor (#55)
78554e5 fix: omega and shrinkage summary table
b28a31a fix: theta stderror reporting
95427e9 test: add simple multiomega test
bd939f3 fix: omega indices
cc4b4b8 test: add acop before fixes
be5b68e refactor: update constants to reflect parser needs
6c2c05f test: add simple models to use for specific future tests
722e36c test: move SummaryTest file so that it gets picked up by a top level go test run
51b8297 test: update golden files for heuristic change issue: #76
2e3e955 fix: output undefined heuristics issue: 76
6aaa95d test: update golden files for shrinkage update issue: #72
1b8e655 feature: support shrinkage data for mixture models issue: 72
3df4a78 test: add golden files for contpkpd
b065458 test: add golden files for contpkpd
e04312d fix: zero gradient heuristic fix for grd and no-grd issue: #73
c019517 style: remove minue zero
e3bc7cb fix: get sigma parameter values from lst correctly issue: 70
0f5926b test: update golden files for default parameter names
1fa6e01 improvement: set default parameter name for theta issue:#58
16f87cf improvement: set parameter names to default values using NONMEM pattern, with and without ext file issue: 58
40a7ef0 test: add control stream contpkpd to tests
ab2b54e test: update golden test files after recent changes to output
94be9d3 improvement: detect DefaultFlot64 on summary table output and treat as zero
84768a1 improvement: change float default values from 0 to DefaultFloat issue: #54
18d2185 wip: add unit test for read_ext; fix bug with last value issue: #71
0b48d5d test: add unit test for setMissingValuesToDefault
2c0a8bc wip: fix a test, add comments, change function name for clarity
f7b3563 test: update of goldenfiles issue: 44
a51c34e wip: change default method string; use NewRunDetails to get default values
751729e wip: set default values for OFV issue: 64
5363475 wip: populate default values for method and rundetails issue: #61 #63
4ef0b37 wip: populate RandomEffectSD* with default values issue: #60
6519513 wip: populate parameter names with default values issue: #58
590692d improvment: populate shrinkage defaults to correct dimension, swap types 9 and 10 issue: 54
b663a1d test: Rebuild of nonmem 73 ctls on metworx. Added cov, cor, grd, shk files for all when available. Many changes to files, including: Timestamps, estimation times; Precession of numbers; Header\copyright info; Whitespace; number of function evaluations, significant digits, iterations issue: #44
22fc17b test: Rebuild of nonmem 73 ctls on metworx. Added cov, cor, grd, shk files for all when available. Many changes to files, including: Timestamps, estimation times; Precession of numbers; Header\copyright info; Whitespace; number of function evaluations, significant digits, iterations issue: #44
b197960 Revert "test: update golden files to reflect changes in shrinkage values"
7118847 test: update golden files to reflect changes in shrinkage values issue: 54
b383c5c Merge branch 'release/v2.0.0' of https://github.com/metrumresearchgroup/babylon into feature/shrinkage-file
c9de5d4 Merge pull request #51 from metrumresearchgroup/test/nonmem
7ba0bf0 improvement: test and log improvements based on feedback issue: 54
5165c35 feature: support getting shrinkage data from shk file issue: #54
75aa2f8 wip: support parsing shrinkage data from shk file issue: 54
015b571 wip: put existing shrinkage data (from lst) into new structures issue: #55
9c1da87 wip: proposal for new shrinkage structure type issue: 54
017a3fd wip: add 73 files, delete toplevel folders
d794d82 wip: re-organize nonmem test files and folders
2b1cd90 feature/theta-covariance (#35)
3ec31b6 test: add previously .gitignored model output
fa68664 fix: remove explicit panic on range checking, arrays are modofied prior to Summary. #49 #40
1b4fdcb test: Create unit tests for summary table output #50
ab75674 fix: Allow shrinkage to have 0 values in summary table #49
4ee1383 test: add more data checks to test
24aeaf4 fix: Support blank lines in getMatrixData function #48
dcd6091 enhancement: add -file to end of flags. example: no-ext-file
6542eb9 test: update json golden files. #41
2832210 test: update files for meropenem runs. #41
ef6fe70 test: update golden json files; add new tests #41
ea7e2e2 improvement: change shrinkage output from object to array. Note, does not support populating multiple shrinkage objects, this is just a change to the JSON interface. #40
2eb7836 improvement: add output files basename to RunDetails.OotputFilesUsed #46
0f7bed1 fix: do not throw panic if optional cov\cor files are not found #38
49c1fb8 test: update test case with --json flag
6714972 fix: match up omega diagonal estimate values with eta SD shrinkage values in summary table
8ea8c0c Revert "fix: access shrinkage details as next member in the Eta.SD array. requires more testing with other control streams"
5a0027b fix: access shrinkage details as next member in the Eta.SD array. requires more testing with other control streams
4867c91 improvement: use aurora package for text color
b331879 imporovement: add flags to control use of files: ext, grd, cov, cor
0802fa0 feature: support for theta correlation in json output
4c89a76 feature: support for theta covariance values in json output
ea7118c fix: correct name of struct member
4f7723e wip: more testing and refactoring still required
7a4daac Merge pull request #34 from metrumresearchgroup/fix/correlation
0a84636 fix: correlation section ends with a line with 1 on it, break from loop when detected to avoid index out-of-bounds
6cea5c0 Merge pull request #33 from metrumresearchgroup/issue/index-out-of-range
d9a0b58 Merge pull request #29 from metrumresearchgroup/feature/heuristics
97935d3 fix: change default limit for correlation warning from 0.95 to 0.90
743656a fix: add zero-filled shrinkage_detail records to JSON golden test file
5bc738b fix: add zero-populated lists of a...

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v2.0.0-alpha.3

22 Nov 15:38
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Changelog

cc5c8ee tag: alpha 3
03cf06f test: refactor table test
9600cf9 refactor: adjust default copy level to 4 so doesn't copy up anything
cb2e6f7 refactor: adjust missing eta in summary table
b904017 Triage/bugfixes (#83)
2f544a2 Release/v2.0.0 (#26)
144932e shrinkage and testing refactor (#55)
78554e5 fix: omega and shrinkage summary table
b28a31a fix: theta stderror reporting
95427e9 test: add simple multiomega test
bd939f3 fix: omega indices
cc4b4b8 test: add acop before fixes
be5b68e refactor: update constants to reflect parser needs
6c2c05f test: add simple models to use for specific future tests
722e36c test: move SummaryTest file so that it gets picked up by a top level go test run
51b8297 test: update golden files for heuristic change issue: #76
2e3e955 fix: output undefined heuristics issue: 76
6aaa95d test: update golden files for shrinkage update issue: #72
1b8e655 feature: support shrinkage data for mixture models issue: 72
3df4a78 test: add golden files for contpkpd
b065458 test: add golden files for contpkpd
e04312d fix: zero gradient heuristic fix for grd and no-grd issue: #73
c019517 style: remove minue zero
e3bc7cb fix: get sigma parameter values from lst correctly issue: 70
0f5926b test: update golden files for default parameter names
1fa6e01 improvement: set default parameter name for theta issue:#58
16f87cf improvement: set parameter names to default values using NONMEM pattern, with and without ext file issue: 58
40a7ef0 test: add control stream contpkpd to tests
ab2b54e test: update golden test files after recent changes to output
94be9d3 improvement: detect DefaultFlot64 on summary table output and treat as zero
84768a1 improvement: change float default values from 0 to DefaultFloat issue: #54
18d2185 wip: add unit test for read_ext; fix bug with last value issue: #71
0b48d5d test: add unit test for setMissingValuesToDefault
2c0a8bc wip: fix a test, add comments, change function name for clarity
f7b3563 test: update of goldenfiles issue: 44
a51c34e wip: change default method string; use NewRunDetails to get default values
751729e wip: set default values for OFV issue: 64
5363475 wip: populate default values for method and rundetails issue: #61 #63
4ef0b37 wip: populate RandomEffectSD* with default values issue: #60
6519513 wip: populate parameter names with default values issue: #58
590692d improvment: populate shrinkage defaults to correct dimension, swap types 9 and 10 issue: 54
b663a1d test: Rebuild of nonmem 73 ctls on metworx. Added cov, cor, grd, shk files for all when available. Many changes to files, including: Timestamps, estimation times; Precession of numbers; Header\copyright info; Whitespace; number of function evaluations, significant digits, iterations issue: #44
22fc17b test: Rebuild of nonmem 73 ctls on metworx. Added cov, cor, grd, shk files for all when available. Many changes to files, including: Timestamps, estimation times; Precession of numbers; Header\copyright info; Whitespace; number of function evaluations, significant digits, iterations issue: #44
b197960 Revert "test: update golden files to reflect changes in shrinkage values"
7118847 test: update golden files to reflect changes in shrinkage values issue: 54
b383c5c Merge branch 'release/v2.0.0' of https://github.com/metrumresearchgroup/babylon into feature/shrinkage-file
c9de5d4 Merge pull request #51 from metrumresearchgroup/test/nonmem
7ba0bf0 improvement: test and log improvements based on feedback issue: 54
5165c35 feature: support getting shrinkage data from shk file issue: #54
75aa2f8 wip: support parsing shrinkage data from shk file issue: 54
015b571 wip: put existing shrinkage data (from lst) into new structures issue: #55
9c1da87 wip: proposal for new shrinkage structure type issue: 54
017a3fd wip: add 73 files, delete toplevel folders
d794d82 wip: re-organize nonmem test files and folders
2b1cd90 feature/theta-covariance (#35)
3ec31b6 test: add previously .gitignored model output
fa68664 fix: remove explicit panic on range checking, arrays are modofied prior to Summary. #49 #40
1b4fdcb test: Create unit tests for summary table output #50
ab75674 fix: Allow shrinkage to have 0 values in summary table #49
4ee1383 test: add more data checks to test
24aeaf4 fix: Support blank lines in getMatrixData function #48
dcd6091 enhancement: add -file to end of flags. example: no-ext-file
6542eb9 test: update json golden files. #41
2832210 test: update files for meropenem runs. #41
ef6fe70 test: update golden json files; add new tests #41
ea7e2e2 improvement: change shrinkage output from object to array. Note, does not support populating multiple shrinkage objects, this is just a change to the JSON interface. #40
2eb7836 improvement: add output files basename to RunDetails.OotputFilesUsed #46
0f7bed1 fix: do not throw panic if optional cov\cor files are not found #38
49c1fb8 test: update test case with --json flag
6714972 fix: match up omega diagonal estimate values with eta SD shrinkage values in summary table
8ea8c0c Revert "fix: access shrinkage details as next member in the Eta.SD array. requires more testing with other control streams"
5a0027b fix: access shrinkage details as next member in the Eta.SD array. requires more testing with other control streams
4867c91 improvement: use aurora package for text color
b331879 imporovement: add flags to control use of files: ext, grd, cov, cor
0802fa0 feature: support for theta correlation in json output
4c89a76 feature: support for theta covariance values in json output
ea7118c fix: correct name of struct member
4f7723e wip: more testing and refactoring still required
7a4daac Merge pull request #34 from metrumresearchgroup/fix/correlation
0a84636 fix: correlation section ends with a line with 1 on it, break from loop when detected to avoid index out-of-bounds
6cea5c0 Merge pull request #33 from metrumresearchgroup/issue/index-out-of-range
d9a0b58 Merge pull request #29 from metrumresearchgroup/feature/heuristics
97935d3 fix: change default limit for correlation warning from 0.95 to 0.90
743656a fix: add zero-filled shrinkage_detail records to JSON golden test file
5bc738b fix: add zero-populated lists of appropriate length when shrinkage values are not defined
4249227 feat: finish getCorrelationStatus; rename some functions for clarity
9686d6a improvement: add Marshall method for HeuristicStatus and unit tests
c3d8659 fix: check length against userEtaIndex
f584ee2 fix: check size of ShrinkageDetails.Eta.SD before accessing; add info to panic for unsupported formats
7b8291e wip: unit test unmarshal
6b0ca81 wip: setCorrelationsOk is functional, can be optimized
63e842d improvement: add flags to control using ext and grd files
d521dce wip: change hueristic type and support marshal\unmarshal; correlation check in progress
890c76c improvement: add parameter largeNumberLimit to function setLargeConditionNumber
516fc46 wip: consume grd file; change bool to new type Status
5ba60e6 wip: start of correlation check; initial commit of grd file reading
dca3bd4 wip: hueristic support for CovarianceStepOmitted, LargeConditionNumber, ParameterNearBoundary, HessianReset
24d1295 fix: remove function newBool
6430893 feat: add hueristic support for: MinimizationSuccessful, HasFinalZeroGradient, HasZeroGradient
e2827da Merge pull request #25 from metrumresearchgroup/feature/replace-termtable
186291d imporovement: use native color escape sequences to color individual cells
08340de wip: replace termtable with tablewriter, can't seem to change color of individual rows
cc3ffd3 refactor summary outputs (#16)

v2.0.0-alpha.2

13 Sep 19:17
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3a45fd2 fix: missing json flag for summary

v2.0.0-alpha.1

13 Sep 18:25
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error with this one, extraneous --tree flag still present instead of just --json

Changelog

493a942 fix: extra json
bac487b release: v2.0.0-alpha.1 with json flag
4f5149f test: update files for testing
801feaf test: updates to files required for testing
1ddf690 wip: populate zero in stderr arrays to same dimesions as estimate arrays if they are empty
ff5cb90 test: add csv data for example-models
cd2a297 chore: remove extra assert
e15250c test: remove extra marshalling; allow bbi exe to be found by path
5968bfb test: add end-to-end testing of summary output
cd35ee9 wip: remove unused generated structure
ae5c8de wip: adding this for review. Using json.Marshall\Unmarshall we can test.Assert on the populated structures. This could be useful after an initial review of the data for completness. The location of this test file (summart_test.go) and the NONMEM files is TDB.
92dbff2 refactor: switch to using ext parser for parameter estimates
d9a713b add: implement ext parser for extracting run info
c76507c refactor: adjust to capturing all estimation methods
ec8ee8c refactor: restructure parameter containing structs
aaceede refactor: generalize data model so can get data from elsewhere
8d6df3b add: io function for ext key lines, made to be as fast as possible
ecbe161 add: more specific omega table with clearer names
8a1430a dep: go-funk
18c1e8f add: get diagonal elements so can determin which etas have shrinkage
07aa1db refactor: add json tags and rename NMversion to Version
8d0a87f add: red to etas with shrinkage > 30%
781e421 refactor: drop SN and start adding more general info
d04a51d fix: better logic for covariance detection
cd5afea dep: add testify direct dep
66544cc fix: parse theta range if multiple theta-type blocks
46865e7 wip: support for 1 (of 2) kinds of shrinkage
a6bb3b9 Merge pull request #14 from metrumresearchgroup/feature/ofv
b0bd6a2 refactor: don't need in/out object in parseOFV
ceb2a4b refactor: change ofvDetails from pointer to object
c2bc7c1 refactor: use assert in tests; search for, and replace, "#OBJV:"
316d5d2 refactor: move some more tructures to structs.go
d969a39 wip: support for OBJV. note #OBJV appears to be the same value as "OBJECTIVE FUNCTION VALUE WITHOUT CONSTANT"
fc08eea wip: support first set of new summary data. unit test passes, int… (#12)
14fcfa3 fix: use last #METH to get method; drop reading TABLE for now since TABLE may span lines
07f5c5f refactor: use tibble instead of dataframe, use everything() in select
ae57400 refactor: feedback from last push, use string.Fields; don't explicity init vars with value
3344caf wip: add flag columns to dataframe
5299de1 wip: use map_df and readr:read_lines
15edfde wip: ddmore.Rmd has R code for searching through ddmore files
e286dd2 fix: check index before attempting to parse, minor updates to ParseRunDetails
1fe03fe wip: support first set of new summary data. unit test passes, int. test pending
1e1c56b wip: add new struct types to support summary data (#11)
2b2397d refactor: explictly set parameter values for RunDetails
d35f326 refactor: set string array default value to []string{} instead of nil
2e4198c Merge branch 'release/v1.1.0' of https://github.com/metrumresearchgroup/babylon into feature/new-structs
05bb759 feat: add build support with buildTime sent from Makefile to main… (#10)
435072f doc: add info for make install with timestamp
3981ec8 wip: add new struct types to support summary data
867f10a feat: add build support with buildTime sent from Makefile to main.go
6db86e1 refactor: metrumify
c887788 chore: more module refinement
aceac38 Merge pull request #7 from metrumresearchgroup/refactor/go-mod
ddbae25 dep: add gopls
096ae2a dep: update deps
d1f0726 refactor: switch to go modules
0165f12 Benchmark (#6)
73675be switch duration to float
dbbb54f NewClient explicitly passes database location
bd83602 update chi and deps
3734628 update duration to be float64 to track fractional second of run time

v1.1.1-bbq

22 Nov 04:40
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12880a6 set permissions to 777


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