Update dependencies to last version in bioconda

[lpantano]

Hi!

I put all the dependencies in bioconda. But right now miRge has strict dependencies version. Do you think you could try to get a conda environment working and try miRge code with those versions to see if not many changes are needed it?

I know about bioconda, probably you need to change the Generic.Alignment class to MultiSeqAlignment now, but maybe that is the mainly one?

That way I could fully integrate it in bcbio-nextgen and people would use more miRge.

I install all the dependencies using channel bioconda and conda-forge.

Thanks!

[mhalushka]

Thank you! We will look into making those changes right away.