How can I get files like tagMir-all.gff?

[illumination-k]

Hi,
I would like to analyze isomiRs by using isomiR-SEA ,mirtop and R-package(isomiRs).

Your quick start example to import isomiR-SEA files is
(and maybe your example of 'isomiR-SEA' is example of 'validation')

mirtop gff --format isomirsea -sps hsa --hairpin  examples/annotate/hairpin.fa --gtf  examples/annotate/hsa.gff3 -o  test_out examples/isomir-sea/tagMir-all.gff

But I think isomiR-SEA generate just below files...
• out_result_mature_21_ambigue.txt
• out_result_mature_21_ambigue_ambigue_selected.txt
• out_result_mature_21_tag_ambigue.txt
• out_result_mature_21_tag_ambigue_selected.txt
• out_result_mature_21_tag_unique.txt
• out_result_mature_21_unique.txt
• out_result_mature_21_unique_ambigue_selected.txt

So I wondered how can I get files like tagMir-all.gff.

Can you tell me how can I generate this?

[lpantano]

Thank very much for the question, I will tag @gurgese who is the developer of isomir-sea. I will add that to the documentation when we get the answer from him.

Thanks!