From afc24d5743ecb1597e88ea20a71b93a990671fe4 Mon Sep 17 00:00:00 2001
From: William Chen <chenwilliamy77@gmail.com>
Date: Thu, 25 Jan 2024 14:48:19 -0500
Subject: [PATCH 1/2] Update Manifest.toml for package updates

---
 Manifest.toml | 280 +++++++++++++++++++++++++++++++++++---------------
 1 file changed, 196 insertions(+), 84 deletions(-)

diff --git a/Manifest.toml b/Manifest.toml
index ea3ebfa..ce4da67 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -1,42 +1,60 @@
 # This file is machine-generated - editing it directly is not advised
 
+[[Artifacts]]
+uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
+
 [[Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
-[[BinaryProvider]]
-deps = ["Libdl", "Logging", "SHA"]
-git-tree-sha1 = "c7361ce8a2129f20b0e05a89f7070820cfed6648"
-uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
-version = "0.5.6"
+[[BitFlags]]
+git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b"
+uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
+version = "0.1.8"
 
-[[CategoricalArrays]]
-deps = ["Compat", "DataAPI", "Future", "JSON", "Missings", "Printf", "Reexport", "Unicode"]
-git-tree-sha1 = "5f4400b24adb1fbed17a9dcc1e8ab8aaf5b03d1f"
-uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597"
-version = "0.6.0"
+[[CodecZlib]]
+deps = ["TranscodingStreams", "Zlib_jll"]
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
+uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
+version = "0.7.3"
 
 [[Compat]]
-deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "84aa74986c5b9b898b0d1acaf3258741ee64754f"
+deps = ["Dates", "LinearAlgebra", "TOML", "UUIDs"]
+git-tree-sha1 = "75bd5b6fc5089df449b5d35fa501c846c9b6549b"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "2.1.0"
+version = "4.12.0"
+
+[[CompilerSupportLibraries_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
+version = "0.5.2+0"
+
+[[ConcurrentUtilities]]
+deps = ["Serialization", "Sockets"]
+git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
+uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
+version = "2.3.0"
+
+[[Crayons]]
+git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15"
+uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f"
+version = "4.1.1"
 
 [[DataAPI]]
-git-tree-sha1 = "8903f0219d3472543fc4b2f5ebaf675a07f817c0"
+git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.0.1"
+version = "1.16.0"
 
 [[DataFrames]]
-deps = ["CategoricalArrays", "Compat", "DataAPI", "InvertedIndices", "IteratorInterfaceExtensions", "Missings", "PooledArrays", "Printf", "REPL", "Reexport", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
-git-tree-sha1 = "271528230c65a4517522e2968c3deed76b92b998"
+deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"]
+git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8"
 uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
-version = "0.19.4"
+version = "1.6.1"
 
 [[DataStructures]]
-deps = ["InteractiveUtils", "OrderedCollections"]
-git-tree-sha1 = "0809951a1774dc724da22d26e4289bbaab77809a"
+deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
+git-tree-sha1 = "ac67408d9ddf207de5cfa9a97e114352430f01ed"
 uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-version = "0.17.0"
+version = "0.18.16"
 
 [[DataValueInterfaces]]
 git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@@ -47,23 +65,21 @@ version = "1.0.0"
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 
-[[DelimitedFiles]]
-deps = ["Mmap"]
-uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
-
-[[Distributed]]
-deps = ["Random", "Serialization", "Sockets"]
-uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
+[[ExceptionUnwrapping]]
+deps = ["Test"]
+git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a"
+uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4"
+version = "0.1.10"
 
 [[Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
 
 [[HTTP]]
-deps = ["Base64", "Dates", "IniFile", "MbedTLS", "Sockets"]
-git-tree-sha1 = "f1e1b417a34cf73a70cbed919915bf8f8bad1806"
+deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
+git-tree-sha1 = "abbbb9ec3afd783a7cbd82ef01dcd088ea051398"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "0.8.6"
+version = "1.10.1"
 
 [[HttpCommon]]
 deps = ["Dates", "Nullables", "Test", "URIParser"]
@@ -71,127 +87,191 @@ git-tree-sha1 = "46313284237aa6ca67a6bce6d6fbd323d19cff59"
 uuid = "77172c1b-203f-54ac-aa54-3f1198fe9f90"
 version = "0.5.0"
 
-[[IniFile]]
-deps = ["Test"]
-git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8"
-uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
-version = "0.5.0"
+[[InlineStrings]]
+deps = ["Parsers"]
+git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461"
+uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48"
+version = "1.4.0"
 
 [[InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[InvertedIndices]]
-deps = ["Test"]
-git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc"
+git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
 uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
-version = "1.0.0"
+version = "1.3.0"
 
 [[IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
+[[JLLWrappers]]
+deps = ["Artifacts", "Preferences"]
+git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
+uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
+version = "1.5.0"
+
 [[JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
-git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e"
+git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
-version = "0.21.0"
+version = "0.21.4"
 
-[[LibGit2]]
-uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
+[[LaTeXStrings]]
+git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
+uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
+version = "1.3.1"
 
 [[Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
 [[LinearAlgebra]]
-deps = ["Libdl"]
+deps = ["Libdl", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
+[[LoggingExtras]]
+deps = ["Dates", "Logging"]
+git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
+uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
+version = "1.0.3"
+
 [[Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[MbedTLS]]
-deps = ["BinaryProvider", "Dates", "Distributed", "Libdl", "Random", "Sockets", "Test"]
-git-tree-sha1 = "2d94286a9c2f52c63a16146bb86fd6cdfbf677c6"
+deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
+git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf"
 uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
-version = "0.6.8"
+version = "1.1.9"
+
+[[MbedTLS_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
+version = "2.28.0+0"
 
 [[Missings]]
-git-tree-sha1 = "29858ce6c8ae629cf2d733bffa329619a1c843d0"
+deps = ["DataAPI"]
+git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272"
 uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
-version = "0.4.2"
+version = "1.1.0"
 
 [[Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 
+[[MozillaCACerts_jll]]
+uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
+version = "2022.2.1"
+
+[[NetworkOptions]]
+uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
+version = "1.2.0"
+
 [[Nullables]]
-deps = ["Compat"]
-git-tree-sha1 = "ae1a63457e14554df2159b0b028f48536125092d"
+git-tree-sha1 = "8f87854cc8f3685a60689d8edecaa29d2251979b"
 uuid = "4d1e1d77-625e-5b40-9113-a560ec7a8ecd"
-version = "0.0.8"
+version = "1.0.0"
+
+[[OpenBLAS_jll]]
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
+uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
+version = "0.3.20+0"
+
+[[OpenSSL]]
+deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
+git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2"
+uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c"
+version = "1.4.1"
+
+[[OpenSSL_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
+uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
+version = "3.0.12+0"
 
 [[OrderedCollections]]
-deps = ["Random", "Serialization", "Test"]
-git-tree-sha1 = "c4c13474d23c60d20a67b217f1d7f22a40edf8f1"
+git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
-version = "1.1.0"
+version = "1.6.3"
 
 [[Parsers]]
-deps = ["Dates", "Test"]
-git-tree-sha1 = "ef0af6c8601db18c282d092ccbd2f01f3f0cd70b"
+deps = ["Dates", "PrecompileTools", "UUIDs"]
+git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "0.3.7"
-
-[[Pkg]]
-deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
-uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+version = "2.8.1"
 
 [[PooledArrays]]
-git-tree-sha1 = "6e8c38927cb6e9ae144f7277c753714861b27d14"
+deps = ["DataAPI", "Future"]
+git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
 uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
-version = "0.5.2"
+version = "1.4.3"
+
+[[PrecompileTools]]
+deps = ["Preferences"]
+git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f"
+uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
+version = "1.2.0"
+
+[[Preferences]]
+deps = ["TOML"]
+git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
+uuid = "21216c6a-2e73-6563-6e65-726566657250"
+version = "1.4.1"
+
+[[PrettyTables]]
+deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"]
+git-tree-sha1 = "88b895d13d53b5577fd53379d913b9ab9ac82660"
+uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
+version = "2.3.1"
 
 [[Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets"]
+deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [[Random]]
-deps = ["Serialization"]
+deps = ["SHA", "Serialization"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
 [[Reexport]]
-deps = ["Pkg"]
-git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0"
+git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
-version = "0.2.0"
+version = "1.2.2"
 
 [[SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
+version = "0.7.0"
+
+[[SentinelArrays]]
+deps = ["Dates", "Random"]
+git-tree-sha1 = "0e7508ff27ba32f26cd459474ca2ede1bc10991f"
+uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c"
+version = "1.4.1"
 
 [[Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
-[[SharedArrays]]
-deps = ["Distributed", "Mmap", "Random", "Serialization"]
-uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
+[[SimpleBufferStream]]
+git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1"
+uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7"
+version = "1.1.0"
 
 [[Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[SortingAlgorithms]]
-deps = ["DataStructures", "Random", "Test"]
-git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd"
+deps = ["DataStructures"]
+git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "0.3.1"
+version = "1.2.1"
 
 [[SparseArrays]]
 deps = ["LinearAlgebra", "Random"]
@@ -201,27 +281,49 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 
+[[StringManipulation]]
+deps = ["PrecompileTools"]
+git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5"
+uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
+version = "0.3.4"
+
+[[TOML]]
+deps = ["Dates"]
+uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
+version = "1.0.0"
+
 [[TableTraits]]
 deps = ["IteratorInterfaceExtensions"]
-git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
+git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
 uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
-version = "1.0.0"
+version = "1.0.1"
 
 [[Tables]]
-deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
-git-tree-sha1 = "aaed7b3b00248ff6a794375ad6adf30f30ca5591"
+deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
+git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "0.2.11"
+version = "1.11.1"
 
 [[Test]]
-deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
+deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
+[[TranscodingStreams]]
+deps = ["Random", "Test"]
+git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84"
+uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
+version = "0.10.2"
+
 [[URIParser]]
-deps = ["Test", "Unicode"]
-git-tree-sha1 = "6ddf8244220dfda2f17539fa8c9de20d6c575b69"
+deps = ["Unicode"]
+git-tree-sha1 = "53a9f49546b8d2dd2e688d216421d050c9a31d0d"
 uuid = "30578b45-9adc-5946-b283-645ec420af67"
-version = "0.4.0"
+version = "0.4.1"
+
+[[URIs]]
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
+uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
+version = "1.5.1"
 
 [[UUIDs]]
 deps = ["Random", "SHA"]
@@ -229,3 +331,13 @@ uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 
 [[Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
+
+[[Zlib_jll]]
+deps = ["Libdl"]
+uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
+version = "1.2.12+3"
+
+[[libblastrampoline_jll]]
+deps = ["Artifacts", "Libdl", "OpenBLAS_jll"]
+uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
+version = "5.1.1+0"

From e18aa114ec6aab0f98e0d00ea6f454561cd84cf7 Mon Sep 17 00:00:00 2001
From: William Chen <chenwilliamy77@gmail.com>
Date: Thu, 27 Feb 2025 18:35:30 -0500
Subject: [PATCH 2/2] Remove Manifest.toml from version control

---
 .gitignore    |   1 +
 Manifest.toml | 343 --------------------------------------------------
 2 files changed, 1 insertion(+), 343 deletions(-)
 delete mode 100644 Manifest.toml

diff --git a/.gitignore b/.gitignore
index 8c960ec..0ee3d17 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,4 @@
 *.jl.cov
 *.jl.*.cov
 *.jl.mem
+Manifest.toml
\ No newline at end of file
diff --git a/Manifest.toml b/Manifest.toml
deleted file mode 100644
index ce4da67..0000000
--- a/Manifest.toml
+++ /dev/null
@@ -1,343 +0,0 @@
-# This file is machine-generated - editing it directly is not advised
-
-[[Artifacts]]
-uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-
-[[Base64]]
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