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"Semantic type MicomMedium[Global] does not have a compatible directory format" Thanks in advance :D |
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Do you have q2-micom installed in the Qiime 2 environment? You can check by running |
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Do you have q2-micom installed in the Qiime 2 environment? You can check by running
!qiime micom --help
in the notebook. If you only want to use the Python micom package without Qiime you don't really need to save it as a Qiime artifact. Just saving the medium as CSV withcompleted.to_csv("my_medium.csv", index=False)
and reading it with pandas before you use it (medium = pd.read_csv("my_medium.csv")
) would be sufficient in that case.