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microsoft/topologic
Reorder graph augmentation in omnibus embedding

We want to perform ptr and cvec after we reduce the graphs to contain the common set of nodes
  • nicaurvi
  • 1
  • Opened 
    on Nov 5, 2020
  • #53

microsoft/topologic
Modularity components returning wrong value

There are some wrong assumptions in the networkx edge iteration behavior that is resulting in incorrect modularity values being returned. This was noticed when being implemented the first time but incorrectly ...
  • daxpryce
  • Opened 
    on Jul 7, 2020
  • #47

microsoft/topologic
Add leiden native code to topologic

Leiden University advanced the community identification algorithm first developed by Universite catholique de Louvain in the paper From Louvain to Leiden: guaranteeing well-connected communities, as well ...
  • daxpryce
  • 3
  • Opened 
    on Jun 10, 2020
  • #46

microsoft/topologic
Prep for including rust native code into topologic

Our Leiden community partitioning is ready for inclusion into topologic. Rather than move all of the existing topologic code around and include the native code all in one PR, I want to ensure we focus ...
  • daxpryce
  • Opened 
    on Jun 10, 2020
  • #45

microsoft/topologic
Add default value of interpolate_walk_lengths_by_node_degree to docs

We specify the default in the method signature but we should also specify it in the docs. https://topologic.readthedocs.io/en/latest/topologic.embedding.html?highlight=node2vec#topologic.embedding.node2vec_embedding ...
  • nicaurvi
  • Opened 
    on Jun 9, 2020
  • #44

microsoft/topologic
Explain `cut_process` in docs

I was trying to use ts.statistics.cut_edges_by_weight and I got a bit confused by the cut_process argument here - figured it out, but seems worth explaining in the docstring for this function. Could these ...
  • bdpedigo
  • Opened 
    on Jun 9, 2020
  • #43

microsoft/topologic
Update for Sphinx 3.x+

Sphinx 3.0.3 has released, but it doesn t seem to work well with recommonmark just yet. Regardless, we need to find a way to make it work.
  • daxpryce
  • Opened 
    on May 6, 2020
  • #42

microsoft/topologic
Modularity Components

We ve had a request to add a function that will return a dictionary of communities to the portion of modularity they are responsible for adding in the full modularity calculation
  • daxpryce
  • Opened 
    on May 6, 2020
  • #40

microsoft/topologic
rank_edges function does not currently work.

topologic/graph_augmentation.py needs to have one line changed: edge_count = len(graph.edges) to: edge_count = len(graph.edges())
  • adutchengineer
  • Opened 
    on Mar 13, 2020
  • #36

microsoft/topologic
Laplacian Spectral Embedding multiple dimension test fails on Mac OS

- tests/embedding/test_laplacian_spectral_embedding.py - test_laplacian_embedding_elbowcut_none This test fails on Mac OS in the github matrix action to run tests on Linux, Windows and Mac OS. The Linux ...
  • nicaurvi
  • 1
  • Opened 
    on Mar 12, 2020
  • #35
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