ci2.yml

name: MODFLOW 6 continuous integration
on:
  push:
    branches:
      - master
      - develop
      - ci-diagnose*
      - netcdf-ci
    paths-ignore:
      - '**.md'
      - 'doc/**'
  pull_request:
    branches:
      - master
      - develop
    paths-ignore:
      - '**.md'
      - 'doc/**'
jobs:

  netcdf_test_win:
    name: netcdf4 testing
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ windows-2022 ]
        #hdf5: [ 1.12.2 ]
        #netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
        #netcdf: [ v4.9.0, main ]
    defaults:
      run:
        shell: bash -l {0}
    env:
      FC: gfortran
      GCC_V: 12
    steps:

      - name: Checkout modflow6
        uses: actions/checkout@v3
        with:
          path: modflow6

      - name: Setup MSYS2
        uses: msys2/setup-msys2@v2
        with:
          update: true
          install: |
            git
            make
            mingw-w64-x86_64-gcc
            mingw-w64-x86_64-python
            mingw-w64-x86_64-python-pip
            mingw-w64-x86_64-python-pytest

      - name: Setup GNU Fortran ${{ env.GCC_V }}
        uses: awvwgk/setup-fortran@main
        with:
          compiler: gcc
          version: ${{ env.GCC_V }}

      - name: Install System dependencies
        shell: msys2 {0}
        run: |
          pacman -Syu
          #pacman -Sy --noconfirm --needed automake autoconf libxml2 libtool git wget curl bzip2 m4 flex bison cmake tar base-devel
          pacman -S --noconfirm --needed base-devel unzip mingw-w64-x86_64-toolchain mingw-w64-x86_64-libtool mingw-w64-x86_64-cmake

      - name: Install hdf5
        shell: msys2 {0}
        run: |
          pacman -U --noconfirm https://repo.msys2.org/mingw/mingw64/mingw-w64-x86_64-hdf5-1.12.2-2-any.pkg.tar.zst

      - name: Install netcdf-c
        shell: msys2 {0}
        run: |
          cd $HOME
          wget https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.0.zip
          unzip v4.9.0.zip
          cd $HOME/netcdf-c-4.9.0
          ./configure --enable-static --disable-shared --disable-dap --disable-examples --disable-v2 --disable-utilities --disable-testsets
          make install

      - name: Install netcdf-f
        shell: msys2 {0}
        run: |
          cd $HOME
          wget https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.6.0.zip
          unzip v4.6.0.zip
          cd $HOME/netcdf-fortran-4.6.0
          LIBS="$(nc-config --libs)" ./configure --enable-static --disable-shared
          make install

      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: modflow6/environment.yml
          init-shell: >-
            bash
            powershell
          cache-environment: true
          cache-downloads: true

      - name: Build modflow6
        working-directory: modflow6
        run: |
          meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin
          meson install -C builddir

      - name: Show Meson logs
        if: failure()
        working-directory: modflow6
        run: cat builddir/meson-logs/meson-log.txt

      - name: Update flopy
        working-directory: modflow6/autotest
        run: python update_flopy.py

      - name: Get executables
        working-directory: modflow6/autotest
        env:
          GITHUB_TOKEN: ${{ github.token }}
        run: pytest -v --durations 0 get_exes.py

      - name: Test programs
        working-directory: modflow6/autotest
        env:
          REPOS_PATH: ${{ github.workspace }}
        run: |
          branch="${{ github.ref_name }}"
          marker="not large"
          markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker")
          pytest -v -n auto --durations 0 -m "$markers"