NAMESPACE

# Generated by roxygen2: do not edit by hand

export(ApplyCountThreshold)
export(AvgFeatureExpression)
export(ClusterAvg)
export(ClusterCells)
export(ClusterSig)
export(ClusterSig_single)
export(ColorHue)
export(CountClusters)
export(FeatureScatterPlot)
export(FindRootCell)
export(FindRootCluster)
export(GetDominatorTree)
export(GetMarkerTable)
export(GetPredecessors)
export(GetSignalingPartners)
export(ImportPathway)
export(JoinGraphComponents)
export(LoadData)
export(LogNormalize)
export(PlotClusterExpression)
export(PlotLineage)
export(PlotTopN)
export(PlotTopN_Grid)
export(RepresentationMap)
export(SelectData)
export(SigPlot)
export(SigPlot_Cluster)
export(SimilarityM)
export(ViolinPlotExpression)
import(doParallel)
import(dplyr)
import(foreach)
import(ggplot2)
import(umap)
importFrom(FNN,get.knnx)
importFrom(Matrix,Matrix)
importFrom(Matrix,as.matrix)
importFrom(Matrix,colMeans)
importFrom(Matrix,nnzero)
importFrom(Matrix,norm)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(Matrix,which)
importFrom(NMF,basis)
importFrom(NMF,nmf)
importFrom(NMF,seed)
importFrom(Rtsne,Rtsne)
importFrom(cluster,pam)
importFrom(cowplot,get_legend)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,mutate_all)
importFrom(dplyr,top_n)
importFrom(expm,sqrtm)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(graphics,legend)
importFrom(graphics,plot)
importFrom(graphics,title)
importFrom(igraph,"E<-")
importFrom(igraph,E)
importFrom(igraph,components)
importFrom(igraph,distances)
importFrom(igraph,edges)
importFrom(igraph,get.edge.ids)
importFrom(igraph,get.shortest.paths)
importFrom(igraph,graph.data.frame)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,layout_with_kk)
importFrom(igraph,mst)
importFrom(igraph,plot.igraph)
importFrom(igraph,shortest.paths)
importFrom(magrittr,"%>%")
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,prcomp)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(umap,umap)
importFrom(utils,read.csv)
importFrom(utils,read.delim)