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terminate called after throwing an instance of 'std::invalid_argument' what(): stod #11

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WWz33 opened this issue Jan 31, 2024 · 0 comments

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@WWz33
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WWz33 commented Jan 31, 2024

Hi,Mkerin
I've successfully run example.I get this error when I run my data.
lemma_error.txt

Commandline arguments:
../biosoft/LEMMA/build/lemma_1_0_4 \
        --pheno=phe.txt.gz \
        --environment=env.txt.gz \
        --VB=true \
        --bgen=input_bgen/205_0.8_q30_bg_ldpruned.bgen \
        --singleSnpStats=true \
        --RHEreg=true \
        --random-seed=3 \
        --mStreamBgen=bgen_filenames.txt \
        --out=inference.out \

Starting analysis at Wed Jan 31 18:57:23 2024

View: bgen file (layout = 2, zlib compression) with 205 named samples and 109338 variants.
IndexQuery: query will return 109338 variants.
Reading matrix of size 205 x 1 from phe.txt.gz
Reading matrix of size 205 x 23 from env.txt.gz
terminate called after throwing an instance of 'std::invalid_argument'
  what():  stod
[DESKTOP-37PT7FF:17986] *** Process received signal ***
[DESKTOP-37PT7FF:17986] Signal: Aborted (6)
[DESKTOP-37PT7FF:17986] Signal code:  (-6)
terminate called after throwing an instance of 'std::invalid_argument'
  what():  stod
terminate called after throwing an instance of 'std::invalid_argument'
  what():  stod
[DESKTOP-37PT7FF:17996] *** Process received signal ***
[DESKTOP-37PT7FF:17996] Signal: Aborted (6)
[DESKTOP-37PT7FF:17996] Signal code:  (-6)
[DESKTOP-37PT7FF:18001] *** Process received signal ***
[DESKTOP-37PT7FF:18001] Signal: Aborted (6)
[DESKTOP-37PT7FF:18001] Signal code:  (-6)
[DESKTOP-37PT7FF:17986] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f06d6a52520]
[DESKTOP-37PT7FF:17986] [ 1] [DESKTOP-37PT7FF:18001] [ 0] [DESKTOP-37PT7FF:17996] [ 0] /lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f06d6aa69fc]
[DESKTOP-37PT7FF:17986] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f05422dd520]
[DESKTOP-37PT7FF:17996] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe381

Appreciate your suggestions to solve this issue.
Best!

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