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I think weka doesn't provide an option to set initial centroids, which I think is crucial for a valid comparison; I guess we could patch the weka buildCluster method. Maybe I missed something?
I had vague memory of handling this a long time ago (like 5 years now). I thought that Weka did allow some way to do it, but I can't remember for sure. Patching a method seems like a reasonable solution to me if we need to, but I'll dig into the docs and code for Weka a little bit more.
But will always use random centers.
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