myImagePlot.R

myImagePlot <- function(x, ...)
{
     min <- min(x)
     max <- max(x)
     yLabels <- rownames(x)
     xLabels <- colnames(x)
     title <-c()
  # check for additional function arguments
  if( length(list(...)) ){
    Lst <- list(...)
    if( !is.null(Lst$zlim) ){
       min <- Lst$zlim[1]
       max <- Lst$zlim[2]
    }
    if( !is.null(Lst$yLabels) ){
       yLabels <- c(Lst$yLabels)
    }
    if( !is.null(Lst$xLabels) ){
       xLabels <- c(Lst$xLabels)
    }
    if( !is.null(Lst$title) ){
       title <- Lst$title
    }
  }
# check for null values
if( is.null(xLabels) ){
   xLabels <- c(1:ncol(x))
}
if( is.null(yLabels) ){
   yLabels <- c(1:nrow(x))
}

layout(matrix(data=c(1,2), nrow=1, ncol=2), widths=c(4,1), heights=c(1,1))

 # Red and green range from 0 to 1 while Blue ranges from 1 to 0
ColorRamp <- colorRampPalette(brewer.pal(9, "Blues"))(256)
# ColorRamp <- rgb( seq(0,1,length=256),  # Red
#                   seq(0,1,length=256),  # Green
#                   seq(1,0,length=256))  # Blue
 ColorLevels <- seq(min, max, length=length(ColorRamp))

 # Reverse Y axis
 reverse <- nrow(x) : 1
 yLabels <- yLabels[reverse]
 x <- x[reverse,]


 # Data Map
 par(mar = c(10,7,1,1))
 div<-1
 image(1:length(xLabels), 1:length(yLabels), t(x), col=ColorRamp, xlab="",
 ylab="", axes=FALSE, zlim=c(min,max))
 if( !is.null(title) ){
    title(main=title)
 }
axis(BELOW<-1, at=1:length(xLabels), labels=xLabels, cex.axis=0.5, las=2)
axis(LEFT <-2, at=1:length(yLabels), tick=F, line=0, labels=yLabels, las= HORIZONTAL<-1, cex.axis=0.2)
axis(RIGHT <-4, at=iv, line=0, cex.axis=.5,labels=yLabels[iv],cex.axis=.2,las=1)
#axis(LEFT <-2, at=iv, line=0, labels=rep("*",times=length(iv)), cex.axis=.5)

 # Color Scale
 par(mar = c(10,4,2.5,2))
 image(1, ColorLevels,
      matrix(data=ColorLevels, ncol=length(ColorLevels),nrow=1),
      col=ColorRamp,
      xlab="",ylab="",
      xaxt="n")



 layout(1)
}
# ----- END plot function ----- #